Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq11 118 1e-21
seq1 91.5 1e-13
seq2 89.7 5e-13
>seq11
Length=562504
Score = 118 bits (130), Expect = 1e-21
Identities = 287/432 (66%), Gaps = 17/432 (4%)
Strand=Plus/Plus
Query 47145 ATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTAC 47204
|| || |||||| |||||| || |||| ||||| ||| ||||| |||| || |
Sbjct 36846 ATTGCGTTCGCCGCCGTCGAAGGTATCTTTTTCTCTGGCTCGTTTGCCTCGATCTTCTGG 36905
Query 47205 ATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGAC 47264
| || | || | |||||||||||||| || ||||||||| |||||| | |||
Sbjct 36906 CTCAAGAAGCGTGGCCTCATGCCCGGCCTCACTTTCTCCAACGAGCTCATCTCGCGTGAC 36965
Query 47265 GAAGGCCTGCACACCAACTTTGCCTGTCT-CTACT---ACAACACTAGAGTCGATCAAAA 47320
|| || || |||||| ||||||||||||| || | || | | |||| |
Sbjct 36966 GAGGGTCTTCACACCGACTTTGCCTGTCTGCTTTTCACCCATCTCCGCCGTCGCCC---- 37021
Query 47321 GTTGGACGTGCCCACCGTCAGCGACATGTTT---GCCGAAGCCGTCGCCATTGAGATGGA 47377
| || |||| | ||| || | | || ||| |||||| ||||| |||
Sbjct 37022 ---GCAC---CCCAACCTCATTGAGAAGATTATCCGCGAGGCCGTCAAGATTGAACAGGA 37075
Query 47378 GTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAA 47437
||| | ||||||| || |||| || | | || |||||||| | | ||| | |
Sbjct 37076 GTTCCTTACCGAGGCGCTCCCCGTGTCGCTCATCGGTATGAACGCTGGTCTCATGTGCCA 37135
Query 47438 GTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCA 47497
||||| || || |||||||||||||||||||| || | |||||| ||| |
Sbjct 37136 ATACATTGAGTTCGTCGCCGACCGCCTGCTCGTCGCCCTTGGCAACGACAAGATCTACAA 37195
Query 47498 CACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557
| | ||| || ||||| |||||| | | || || || | |||||| ||||||| ||
Sbjct 37196 CTCGACGAACCCCTTCGACTTTATGGAGATGATCTCTCTGCAAGGCAAGGCCAACTTCTT 37255
Query 47558 CGAGAAGCGCGT 47569
|||| ||||||
Sbjct 37256 CGAGTCGCGCGT 37267
Score = 104 bits (114), Expect = 2e-17
Identities = 154/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | || | ||| | || ||||| || || || ||||||||
Sbjct 28542 CCACCGCGGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAG 28483
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| || || ||||| ||||| || |||| | |||||||| ||||| ||
Sbjct 28482 AGGGTACGACCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 28423
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| || || ||||| |||| |||| |||||||| | ||||||
Sbjct 28422 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG-TCGATGGTGTCCGAAGACTCGAC 28364
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101
|| | ||| | || ||||| || ||||| || ||
Sbjct 28363 CTCAAGGGTGATGGTCTTGCCCGTAAGAGTCTTGAC 28328
Score = 100 bits (110), Expect = 3e-16
Identities = 143/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975
||| ||||| || ||||| ||||| ||| | ||||| || || ||||| || ||
Sbjct 29478 CGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 29419
Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035
||| |||| | |||||||| ||||| || ||||||||||||||| || ||| |||
Sbjct 29418 CGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTCGCCTT 29359
Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094
| ||||| ||| ||||| | ||| ||||| | || | || ||||| || || |
Sbjct 29358 CACGTTGT-CGATAGTGTCGGACGACTCAACTTCAAGAGTGATAGTCTTGCCAGTGAGGG 29300
Query 127095 TTTTTACAAAAATCTGCAT 127113
| || || |||||||||||
Sbjct 29299 TCTTGACGAAAATCTGCAT 29281
Score = 98.7 bits (108), Expect = 9e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| ||||| || ||||| || | || ||| || || ||||| || ||
Sbjct 29249 GTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTACGACCGTCTTCAAGCTGCTTGCCG 29190
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||| | |||||||| |||||||| || |||||||||||| || ||| |||
Sbjct 29189 GCAAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGCCTTC 29130
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| ||||| | |||||| |||| ||| | || ||||| || |||||
Sbjct 29129 ACGTTG-TCGATAGTGTCGGACGACTCGACCTCGAGGGTAATGGTCTTGCCTGTGAGAGT 29071
Query 127096 TTTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 29070 CTTGACGAAGATCTGCAT 29053
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/177 (72%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| || | || ||| || || ||||| || ||
Sbjct 28793 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCGTCCTCGAGCTGCTTGCCG 28734
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||| | |||||||| ||||| || ||||||||||||||| ||| || ||||
Sbjct 28733 GCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 28674
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092
| ||||| ||| |||||||| | ||| || || | || | |||||||||||| ||
Sbjct 28673 ACGTTGT-CGATGGTGTCCGAAGACTCAACCTCAAGAGTGATCGTTTTGCCGGTAAG 28618
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || || || |||| | |||||||| ||||| || || |||||||||
Sbjct 28979 TCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATACCCTCCTTG 28920
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || ||| | | |||| |||||||| |||||||||| ||| |
Sbjct 28919 TCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCCGACGATTCGACTTCGAGGGTAATG 28860
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| ||||| || ||||| || || || ||||||||
Sbjct 28859 GTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 28825
>seq1
Length=4014173
Score = 91.5 bits (100), Expect = 1e-13
Identities = 108/144 (75%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || || ||| |||| | |||||||| || || || ||||||||||||
Sbjct 637212 TCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTG 637153
Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
||| ||| ||| ||||| |||| |||| ||||||| |||||| |||| ||| |
Sbjct 637152 TCCTGGATCTTCGCCTTGACGTTG-TCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 637094
Query 127078 CGTTTTGCCGGTCAGAGTTTTTAC 127101
|| |||||||| || || || ||
Sbjct 637093 GGTCTTGCCGGTGAGGGTCTTAAC 637070
>seq2
Length=3730214
Score = 89.7 bits (98), Expect = 5e-13
Identities = 133/186 (72%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| || | ||||| ||| || ||||| || ||
Sbjct 3658307 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 3658366
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | |||||||| ||||| || ||||||||||||||| ||| || ||||
Sbjct 3658367 GCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 3658426
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| |||||| | ||| || |||| ||| | || ||||| || || ||
Sbjct 3658427 ACGTTG-TCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGT 3658485
Query 127096 TTTTAC 127101
|| ||
Sbjct 3658486 CTTGAC 3658491
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500633574720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |