Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq11 118 1e-21 seq1 91.5 1e-13 seq2 89.7 5e-13 >seq11 Length=562504 Score = 118 bits (130), Expect = 1e-21 Identities = 287/432 (66%), Gaps = 17/432 (4%) Strand=Plus/Plus Query 47145 ATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTAC 47204 || || |||||| |||||| || |||| ||||| ||| ||||| |||| || | Sbjct 36846 ATTGCGTTCGCCGCCGTCGAAGGTATCTTTTTCTCTGGCTCGTTTGCCTCGATCTTCTGG 36905 Query 47205 ATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGAC 47264 | || | || | |||||||||||||| || ||||||||| |||||| | ||| Sbjct 36906 CTCAAGAAGCGTGGCCTCATGCCCGGCCTCACTTTCTCCAACGAGCTCATCTCGCGTGAC 36965 Query 47265 GAAGGCCTGCACACCAACTTTGCCTGTCT-CTACT---ACAACACTAGAGTCGATCAAAA 47320 || || || |||||| ||||||||||||| || | || | | |||| | Sbjct 36966 GAGGGTCTTCACACCGACTTTGCCTGTCTGCTTTTCACCCATCTCCGCCGTCGCCC---- 37021 Query 47321 GTTGGACGTGCCCACCGTCAGCGACATGTTT---GCCGAAGCCGTCGCCATTGAGATGGA 47377 | || |||| | ||| || | | || ||| |||||| ||||| ||| Sbjct 37022 ---GCAC---CCCAACCTCATTGAGAAGATTATCCGCGAGGCCGTCAAGATTGAACAGGA 37075 Query 47378 GTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAA 47437 ||| | ||||||| || |||| || | | || |||||||| | | ||| | | Sbjct 37076 GTTCCTTACCGAGGCGCTCCCCGTGTCGCTCATCGGTATGAACGCTGGTCTCATGTGCCA 37135 Query 47438 GTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCA 47497 ||||| || || |||||||||||||||||||| || | |||||| ||| | Sbjct 37136 ATACATTGAGTTCGTCGCCGACCGCCTGCTCGTCGCCCTTGGCAACGACAAGATCTACAA 37195 Query 47498 CACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 | | ||| || ||||| |||||| | | || || || | |||||| ||||||| || Sbjct 37196 CTCGACGAACCCCTTCGACTTTATGGAGATGATCTCTCTGCAAGGCAAGGCCAACTTCTT 37255 Query 47558 CGAGAAGCGCGT 47569 |||| |||||| Sbjct 37256 CGAGTCGCGCGT 37267 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | || | ||| | || ||||| || || || |||||||| Sbjct 28542 CCACCGCGGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAG 28483 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || ||||| ||||| || |||| | |||||||| ||||| || Sbjct 28482 AGGGTACGACCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 28423 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || || ||||| |||| |||| |||||||| | |||||| Sbjct 28422 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG-TCGATGGTGTCCGAAGACTCGAC 28364 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 || | ||| | || ||||| || ||||| || || Sbjct 28363 CTCAAGGGTGATGGTCTTGCCCGTAAGAGTCTTGAC 28328 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || ||||| ||||| ||| | ||||| || || ||||| || || Sbjct 29478 CGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 29419 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| |||| | |||||||| ||||| || ||||||||||||||| || ||| ||| Sbjct 29418 CGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTCGCCTT 29359 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 | ||||| ||| ||||| | ||| ||||| | || | || ||||| || || | Sbjct 29358 CACGTTGT-CGATAGTGTCGGACGACTCAACTTCAAGAGTGATAGTCTTGCCAGTGAGGG 29300 Query 127095 TTTTTACAAAAATCTGCAT 127113 | || || ||||||||||| Sbjct 29299 TCTTGACGAAAATCTGCAT 29281 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| ||||| || ||||| || | || ||| || || ||||| || || Sbjct 29249 GTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTACGACCGTCTTCAAGCTGCTTGCCG 29190 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| |||||||| || |||||||||||| || ||| ||| Sbjct 29189 GCAAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGCCTTC 29130 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||| | |||||| |||| ||| | || ||||| || ||||| Sbjct 29129 ACGTTG-TCGATAGTGTCGGACGACTCGACCTCGAGGGTAATGGTCTTGCCTGTGAGAGT 29071 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 29070 CTTGACGAAGATCTGCAT 29053 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | || ||| || || ||||| || || Sbjct 28793 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCGTCCTCGAGCTGCTTGCCG 28734 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| ||||| || ||||||||||||||| ||| || |||| Sbjct 28733 GCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 28674 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 | ||||| ||| |||||||| | ||| || || | || | |||||||||||| || Sbjct 28673 ACGTTGT-CGATGGTGTCCGAAGACTCAACCTCAAGAGTGATCGTTTTGCCGGTAAG 28618 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | |||||||| ||||| || || ||||||||| Sbjct 28979 TCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATACCCTCCTTG 28920 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | |||| |||||||| |||||||||| ||| | Sbjct 28919 TCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCCGACGATTCGACTTCGAGGGTAATG 28860 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || ||||| || || || |||||||| Sbjct 28859 GTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 28825 >seq1 Length=4014173 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | |||||||| || || || |||||||||||| Sbjct 637212 TCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTG 637153 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| ||| ||||| |||| |||| ||||||| |||||| |||| ||| | Sbjct 637152 TCCTGGATCTTCGCCTTGACGTTG-TCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 637094 Query 127078 CGTTTTGCCGGTCAGAGTTTTTAC 127101 || |||||||| || || || || Sbjct 637093 GGTCTTGCCGGTGAGGGTCTTAAC 637070 >seq2 Length=3730214 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | ||||| ||| || ||||| || || Sbjct 3658307 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 3658366 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| ||||| || ||||||||||||||| ||| || |||| Sbjct 3658367 GCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 3658426 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | ||| || |||| ||| | || ||||| || || || Sbjct 3658427 ACGTTG-TCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGT 3658485 Query 127096 TTTTAC 127101 || || Sbjct 3658486 CTTGAC 3658491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500633574720