Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq1 232 8e-56
seq11 143 3e-29
seq3 122 1e-22
>seq1
Length=4014173
Score = 232 bits (256), Expect = 8e-56
Identities = 679/1038 (65%), Gaps = 25/1038 (2%)
Strand=Plus/Plus
Query 116248 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 116307
|| || ||||| ||||||||||| || | |||||||| | ||| || || || ||
Sbjct 2026046 TCGGCAAGACCCTGGACACCGAGACCGACGGGGCGATGGCGCATGTTCGAGTTCTTGGCC 2026105
Query 116308 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 116367
|| ||||| || | || | ||| || | | || || ||||| ||||||||
Sbjct 2026106 TCCTGAACGGGGTAGTAGTTGCGCGAGATGACGCAGTCAAGGTTCTTGGTAACAACCTTG 2026165
Query 116368 GTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGA 116427
||||| || |||||||| | | | ||| | ||| |||| | || || |||
Sbjct 2026166 GTGATCTCGTGAAGCTTCTTGAAGTCATAGGTGCTGTTCTCAAAGTCCACGAACGCGGGA 2026225
Query 116428 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 116487
||||| || || || || || || || | ||| || | || |||||| || ||
Sbjct 2026226 AGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCGATGATC 2026285
Query 116488 TCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 116547
|| || || | || || ||| || ||||||| || || || || ||||| |||
Sbjct 2026286 TCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGGTTG 2026345
Query 116548 CACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 116607
|||||||||||||| || | || || ||||| || |||| || ||||| ||
Sbjct 2026346 GCAGCATCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGAATGGCA 2026405
Query 116608 TTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTA 116660
||| | | || | | || | ||| ||| || |||| |||| ||||||
Sbjct 2026406 AACCAGAGCTTCTGGGCCTTGA----TGGTCTTG---CGACCCTTGCCCTCACGCTCGTA 2026458
Query 116661 CTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAG--CCTCTGAGAGCCCTGGTGCCTTA 116718
||| ||| |||| |||||||| || || | | | || | || || || ||
Sbjct 2026459 CTTCTGGTACAGGGTCTCAAACT--TCTCCGAGTGAACGTCGGCAAGACCAGGGCACTCG 2026516
Query 116719 TCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGG 116778
| || || | ||| | ||| | ||| | |||| || ||||||||||||||||| |||
Sbjct 2026517 GCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGG 2026576
Query 116779 ATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 116838
| |||||| || |||| ||||| || |||| | || || | || || || ||
Sbjct 2026577 ACCCAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGG 2026636
Query 116839 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 116898
| || | ||||| | | |||||| ||||| || || ||||| | || | | ||
Sbjct 2026637 AGGTCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACCA 2026696
Query 116899 TTGCGACGA---CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATT 116955
||| ||| |||||| || || | || || |||| | | || |||||
Sbjct 2026697 GGGCGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATG 2026756
Query 116956 GGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTGTTGGCTCTGA 117013
|| | |||||| | || | || || || || ||| ||||| | | |||| | |
Sbjct 2026757 GGGACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAGCCCT--TGGCACGAA 2026814
Query 117014 CATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGA 117073
| ||| ||||| | |||||| || || || ||| ||||| || ||||| | |||
Sbjct 2026815 TGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAAGTCTTGA 2026874
Query 117074 GACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACA 117133
| || ||||||| || ||||||||||| |||| | |||| ||||||||| |||||
Sbjct 2026875 GGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCATGACGACA 2026934
Query 117134 TTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTT 117193
| || || || |||||||||||||||||||| || | ||||| |||| | |
Sbjct 2026935 TCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGCGCT 2026994
Query 117194 GGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTG 117253
|||||| | ||| ||||| | ||| | |||| || ||||| |||||||| |
Sbjct 2026995 CGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCGTGGATACCGATGG 2027054
Query 117254 AGACCCGCATAAACATGT 117271
| || ||||||| |||||
Sbjct 2027055 AAACACGCATAATCATGT 2027072
>seq11
Length=562504
Score = 143 bits (158), Expect = 3e-29
Identities = 353/525 (67%), Gaps = 8/525 (2%)
Strand=Plus/Minus
Query 127241 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAAT 127300
|| ||| |||||||||||| | ||| || | || ||| |||||||||| || ||
Sbjct 37267 ACGCGCGACTCGAAGAAGTTGGCCTTGCCTTGCAGAGAGATCATCTCCATAAAGTCGAAG 37208
Query 127301 GGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGACGATCCGAGAC 127359
|||||| | ||||| | || ||| | |||| ||| || || || | |||
Sbjct 37207 GGGTTCGTCGAGTTGTAGATC-TTGTCGTTGCCAAGGGCGACGAGCAGGCGGTCGGCGAC 37149
Query 127360 GTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGG-AGCG 127418
| |||||||||| | |||| ||| ||||||||||||||| ||| ||| ||||
Sbjct 37148 GAACTCAATGTATTGGCACATGAGACCAGCGTTCATACCGATGAGCG-ACACGGGGAGCG 37090
Query 127419 CGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTGAATAGTGT 127478
| || | |||| ||| ||||| | || || || || | || | ||| ||
Sbjct 37089 CCTCGGTAAGGAACTCCTGTTCAATCTTGACGGCCTCGCGGATAATCTTCTCAATGAGGT 37030
Query 127479 CCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAG-CAAACTCTTGGTGGAGA 127537
|| | | ||| | | |||| || |||| |||| || ||| |||
Sbjct 37029 TGGGGTGCGGGCGACGGCGGAGATGGGTGAAAAGCAG-ACAGGCAAAGTCGGTGTGAAGA 36971
Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597
||||||||||| |||||||| || || ||||| || || |||||||| || ||||||
Sbjct 36970 CCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGGCCGGGCATGAGGCCACGCTTC 36911
Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657
|| | |||||| |||| ||| ||||||||||| ||||| || || || ||||||
Sbjct 36910 TTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAAGATACCTTCGACGGCGGCGAAC 36851
Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA-CCACTTCATCGCCCACTG 127716
|||| || ||||| |||||||| || | | || ||| ||| | |||||| |
Sbjct 36850 GCAATGAGGCGCTCAGCAAAGGA-CGAGCGCTCGTCGGAAATCCAACGGAGCGCCCAGTC 36792
Query 127717 TGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761
||||| |||| ||| || |||| ||||| ||| || | |||||
Sbjct 36791 GGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCCTTGAAGAG 36747
>seq3
Length=3725192
Score = 122 bits (134), Expect = 1e-22
Identities = 196/275 (71%), Gaps = 10/275 (4%)
Strand=Plus/Minus
Query 127390 GTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCAC 127449
||| |||||||| || ||| || ||||||||| | |||| ||||||| || |||||
Sbjct 3008400 GTTGATACCGATAAGCGCACAAGGAAGCGCGTCCGTCAGGAACTCCTTCTCTATTTCCAC 3008341
Query 127450 AGCTTCCCGTACGATGGCGTGAATAGTGTC--CACCCCAGGTCTA-TTGCGTAAAGTC-- 127504
||||| ||||||| || || || || ||| | ||| | | | |
Sbjct 3008340 CGCTTCGGTCACGATGGTGTAAACTTCCTCGTCAGAGCAGCGGTGCTTGAG--ATGCCCA 3008283
Query 127505 TTGAAGAGTTCCACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTC 127564
| || ||| ||| ||||| || ||| |||||||| || || |||||||| ||||||
Sbjct 3008282 TAGAGGAGG--CAC-GCAAAGTCGGTGTGAAGACCCTCATCTCGAGAGATGAGCTCATTC 3008226
Query 127565 GAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAG 127624
||||| || || |||||||||| ||||| || | |||||| || ||| ||||||
Sbjct 3008225 GAGAATGTAAGGCCACGCATGAGACCGCGCTTTTTGAGCCAGAAGATGGCAGCAAATGAT 3008166
Query 127625 CCAGAGAAGAAGATCCCCTCCACACACGCGAACGC 127659
|| ||||||||||| ||||||||||| || || ||
Sbjct 3008165 CCCGAGAAGAAGATGCCCTCCACACATGCAAAGGC 3008131
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613506985272480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |