Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 232 8e-56 seq11 143 3e-29 seq3 122 1e-22 >seq1 Length=4014173 Score = 232 bits (256), Expect = 8e-56 Identities = 679/1038 (65%), Gaps = 25/1038 (2%) Strand=Plus/Plus Query 116248 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 116307 || || ||||| ||||||||||| || | |||||||| | ||| || || || || Sbjct 2026046 TCGGCAAGACCCTGGACACCGAGACCGACGGGGCGATGGCGCATGTTCGAGTTCTTGGCC 2026105 Query 116308 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 116367 || ||||| || | || | ||| || | | || || ||||| |||||||| Sbjct 2026106 TCCTGAACGGGGTAGTAGTTGCGCGAGATGACGCAGTCAAGGTTCTTGGTAACAACCTTG 2026165 Query 116368 GTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGA 116427 ||||| || |||||||| | | | ||| | ||| |||| | || || ||| Sbjct 2026166 GTGATCTCGTGAAGCTTCTTGAAGTCATAGGTGCTGTTCTCAAAGTCCACGAACGCGGGA 2026225 Query 116428 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 116487 ||||| || || || || || || || | ||| || | || |||||| || || Sbjct 2026226 AGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCGATGATC 2026285 Query 116488 TCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 116547 || || || | || || ||| || ||||||| || || || || ||||| ||| Sbjct 2026286 TCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGGTTG 2026345 Query 116548 CACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 116607 |||||||||||||| || | || || ||||| || |||| || ||||| || Sbjct 2026346 GCAGCATCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGAATGGCA 2026405 Query 116608 TTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTA 116660 ||| | | || | | || | ||| ||| || |||| |||| |||||| Sbjct 2026406 AACCAGAGCTTCTGGGCCTTGA----TGGTCTTG---CGACCCTTGCCCTCACGCTCGTA 2026458 Query 116661 CTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAG--CCTCTGAGAGCCCTGGTGCCTTA 116718 ||| ||| |||| |||||||| || || | | | || | || || || || Sbjct 2026459 CTTCTGGTACAGGGTCTCAAACT--TCTCCGAGTGAACGTCGGCAAGACCAGGGCACTCG 2026516 Query 116719 TCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGG 116778 | || || | ||| | ||| | ||| | |||| || ||||||||||||||||| ||| Sbjct 2026517 GCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGG 2026576 Query 116779 ATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 116838 | |||||| || |||| ||||| || |||| | || || | || || || || Sbjct 2026577 ACCCAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGG 2026636 Query 116839 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 116898 | || | ||||| | | |||||| ||||| || || ||||| | || | | || Sbjct 2026637 AGGTCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACCA 2026696 Query 116899 TTGCGACGA---CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATT 116955 ||| ||| |||||| || || | || || |||| | | || ||||| Sbjct 2026697 GGGCGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATG 2026756 Query 116956 GGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTGTTGGCTCTGA 117013 || | |||||| | || | || || || || ||| ||||| | | |||| | | Sbjct 2026757 GGGACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAGCCCT--TGGCACGAA 2026814 Query 117014 CATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGA 117073 | ||| ||||| | |||||| || || || ||| ||||| || ||||| | ||| Sbjct 2026815 TGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAAGTCTTGA 2026874 Query 117074 GACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACA 117133 | || ||||||| || ||||||||||| |||| | |||| ||||||||| ||||| Sbjct 2026875 GGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCATGACGACA 2026934 Query 117134 TTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTT 117193 | || || || |||||||||||||||||||| || | ||||| |||| | | Sbjct 2026935 TCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGCGCT 2026994 Query 117194 GGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTG 117253 |||||| | ||| ||||| | ||| | |||| || ||||| |||||||| | Sbjct 2026995 CGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCGTGGATACCGATGG 2027054 Query 117254 AGACCCGCATAAACATGT 117271 | || ||||||| ||||| Sbjct 2027055 AAACACGCATAATCATGT 2027072 >seq11 Length=562504 Score = 143 bits (158), Expect = 3e-29 Identities = 353/525 (67%), Gaps = 8/525 (2%) Strand=Plus/Minus Query 127241 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAAT 127300 || ||| |||||||||||| | ||| || | || ||| |||||||||| || || Sbjct 37267 ACGCGCGACTCGAAGAAGTTGGCCTTGCCTTGCAGAGAGATCATCTCCATAAAGTCGAAG 37208 Query 127301 GGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGACGATCCGAGAC 127359 |||||| | ||||| | || ||| | |||| ||| || || || | ||| Sbjct 37207 GGGTTCGTCGAGTTGTAGATC-TTGTCGTTGCCAAGGGCGACGAGCAGGCGGTCGGCGAC 37149 Query 127360 GTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGG-AGCG 127418 | |||||||||| | |||| ||| ||||||||||||||| ||| ||| |||| Sbjct 37148 GAACTCAATGTATTGGCACATGAGACCAGCGTTCATACCGATGAGCG-ACACGGGGAGCG 37090 Query 127419 CGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTGAATAGTGT 127478 | || | |||| ||| ||||| | || || || || | || | ||| || Sbjct 37089 CCTCGGTAAGGAACTCCTGTTCAATCTTGACGGCCTCGCGGATAATCTTCTCAATGAGGT 37030 Query 127479 CCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAG-CAAACTCTTGGTGGAGA 127537 || | | ||| | | |||| || |||| |||| || ||| ||| Sbjct 37029 TGGGGTGCGGGCGACGGCGGAGATGGGTGAAAAGCAG-ACAGGCAAAGTCGGTGTGAAGA 36971 Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 ||||||||||| |||||||| || || ||||| || || |||||||| || |||||| Sbjct 36970 CCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGGCCGGGCATGAGGCCACGCTTC 36911 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| |||| ||| ||||||||||| ||||| || || || |||||| Sbjct 36910 TTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAAGATACCTTCGACGGCGGCGAAC 36851 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA-CCACTTCATCGCCCACTG 127716 |||| || ||||| |||||||| || | | || ||| ||| | |||||| | Sbjct 36850 GCAATGAGGCGCTCAGCAAAGGA-CGAGCGCTCGTCGGAAATCCAACGGAGCGCCCAGTC 36792 Query 127717 TGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761 ||||| |||| ||| || |||| ||||| ||| || | ||||| Sbjct 36791 GGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCCTTGAAGAG 36747 >seq3 Length=3725192 Score = 122 bits (134), Expect = 1e-22 Identities = 196/275 (71%), Gaps = 10/275 (4%) Strand=Plus/Minus Query 127390 GTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCAC 127449 ||| |||||||| || ||| || ||||||||| | |||| ||||||| || ||||| Sbjct 3008400 GTTGATACCGATAAGCGCACAAGGAAGCGCGTCCGTCAGGAACTCCTTCTCTATTTCCAC 3008341 Query 127450 AGCTTCCCGTACGATGGCGTGAATAGTGTC--CACCCCAGGTCTA-TTGCGTAAAGTC-- 127504 ||||| ||||||| || || || || ||| | ||| | | | | Sbjct 3008340 CGCTTCGGTCACGATGGTGTAAACTTCCTCGTCAGAGCAGCGGTGCTTGAG--ATGCCCA 3008283 Query 127505 TTGAAGAGTTCCACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTC 127564 | || ||| ||| ||||| || ||| |||||||| || || |||||||| |||||| Sbjct 3008282 TAGAGGAGG--CAC-GCAAAGTCGGTGTGAAGACCCTCATCTCGAGAGATGAGCTCATTC 3008226 Query 127565 GAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAG 127624 ||||| || || |||||||||| ||||| || | |||||| || ||| |||||| Sbjct 3008225 GAGAATGTAAGGCCACGCATGAGACCGCGCTTTTTGAGCCAGAAGATGGCAGCAAATGAT 3008166 Query 127625 CCAGAGAAGAAGATCCCCTCCACACACGCGAACGC 127659 || ||||||||||| ||||||||||| || || || Sbjct 3008165 CCCGAGAAGAAGATGCCCTCCACACATGCAAAGGC 3008131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506985272480