Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq1 127 3e-24
seq3 107 3e-18
>seq1
Length=4014173
Score = 127 bits (140), Expect = 3e-24
Identities = 329/494 (67%), Gaps = 12/494 (2%)
Strand=Plus/Plus
Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGT 203901
||| || ||||||||||||||||| | | || | | | | || ||||||||||||||
Sbjct 2025316 GTCGACGGTGAACTGAATGGCGTTGGCCGACGGGCGGGTACGAAGGTAGTACATGCCGGT 2025375
Query 203902 CTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG-TTTGCTCACGTTGGGGT 203960
||| || || || ||| ||||| | ||||||||||| || | | ||| ||| |
Sbjct 2025376 CTTAAGACCACGCTTCCAGCCGTAAAAGTGCATGGAAGTGAGCTGAGAGAACGAAGGGTT 2025435
Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCA 204020
| | || ||| ||||| || ||||| |||||||| |||| | || || ||||| |
Sbjct 2025436 C-GACAGGTGGATGTTGAGCGACTGCGACTGGTCGATAAAAGCACCACGGTCGGCGGCAA 2025494
Query 204021 TATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTGTGT 204079
| ||||| | |||||||||||||||||| || |||||| | | || || || | |
Sbjct 2025495 GGTCGATAACTGCCTTCTGCGAAATCTCCCAGACAGTCTTGTAGATCGACT-TGATCTCA 2025553
Query 204080 TGAGGCACATCTTCC---CACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135
| || | |||| | || || |||||| || ||| || | | | |
Sbjct 2025554 TCGGGAA----TTCCAGGAATGTGCTGGATCGAACCACCCGAGGCGATGACGAGCTGCTT 2025609
Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195
| | | || |||| | | | | |||| || || || | || |||| || ||
Sbjct 2025610 CATGTTGTCGTCCCAGAGGTCGAGGTTGATGAGGTCACGAAGGAGCCAGGGGCAGACGAC 2025669
Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255
||| ||||| || || ||||| | |||| | | || | |||| | || |||||
Sbjct 2025670 CTGGAAGTCACCAGAGAGCACACGGCGGGAGTAGAGCATCGAGGTGTAAGGCTCGAAGCA 2025729
Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315
|||||| ||| | |||||||| ||| || || |||||||| || | ||| || ||
Sbjct 2025730 CTCGTTCCAGCCAAGAATCTGAGAAGTGGAAGCAGTAGGCATGGGGGCGACGAGAAGCGA 2025789
Query 204316 GTTGCGCACACCGT 204329
|||||| || ||||
Sbjct 2025790 GTTGCGAACGCCGT 2025803
Score = 93.3 bits (102), Expect = 7e-14
Identities = 283/432 (66%), Gaps = 4/432 (1%)
Strand=Plus/Plus
Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224
|| ||| || ||||| || ||| || |||| ||||||||||| || | || | ||
Sbjct 2026558 CTTCATGAAGAGGTCAGGGACCCAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTC 2026617
Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATG-TCGGCGTGCCACGGCTCTA 205283
| || ||||||| | ||| || ||| || || || || ||||| ||||| |
Sbjct 2026618 CTTGCCGTGGTTCTTGCGGAGGTCAAGG-AAGTCGAAAACATCCGCATGCCAGGGCTCAA 2026676
Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343
| | ||| | || || || | |||||| ||||||||||| || || | |||
Sbjct 2026677 GGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCG 2026736
Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403
||| | | | || ||||| || || | |||||||| | ||||| || | |||
Sbjct 2026737 CGTCGTAGGCACGGAGCATGGGGACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGT 2026796
Query 205404 CCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGA 205463
|||||| | || | | |||| ||| ||||| || |||| | ||||| ||
Sbjct 2026797 ACGAGCCCTTGGCACGAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGA 2026856
Query 205464 TCTGGGCGC-ACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC 205522
||||||||| | ||||| || ||| ||||||||| |||| || |||||| || |
Sbjct 2026857 TCTGGGCGCAAGTCTTG-AGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCG 2026915
Query 205523 ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTG 205582
|| || |||| || | || || | | || || |||| |||||| || |||
Sbjct 2026916 ACGAGGAAGCATGACGACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAA 2026975
Query 205583 GCGTGGCTGAAG 205594
||||| |||||
Sbjct 2026976 GCGTGAGTGAAG 2026987
>seq3
Length=3725192
Score = 107 bits (118), Expect = 3e-18
Identities = 171/241 (71%), Gaps = 7/241 (3%)
Strand=Plus/Minus
Query 159815 GGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG 159874
|| ||||| |||| ||| ||||||||||| || || |||||||||||||| || |
Sbjct 3008378 GGAAGCGCGTCCGTCAGGAACTCCTTCTCTATTTCCACCGCTTCGGTCACGATGGTGTAA 3008319
Query 159875 ACACGTTCGT-ACCCCGGCT-TGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGT 159932
|| |||| | | || ||| | ||| || || | |||||||||||||||
Sbjct 3008318 ACTTCCTCGTCAGAGCAGCGGTGCTTGAGATGC---CCATAGA--GGAGGCACGCAAAGT 3008264
Query 159933 CGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGA 159992
|| ||| || ||||| || |||||||||| ||| || || | | ||||| ||||||
Sbjct 3008263 CGGTGTGAAGACCCTCATCTCGAGAGATGAGCTCATTCGAGAATGTAAGGCCACGCATGA 3008204
Query 159993 TCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCA 160052
|| ||| ||||||||| || ||||| ||||| | || || ||||| |||||||
Sbjct 3008203 GACCGCGCTTTTTGAGCCAGAAGATGGCAGCAAATGATCCCGAGAAGAAGATGCCCTCCA 3008144
Query 160053 C 160053
|
Sbjct 3008143 C 3008143
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795154921695680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |