Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1 127 3e-24 seq3 107 3e-18 >seq1 Length=4014173 Score = 127 bits (140), Expect = 3e-24 Identities = 329/494 (67%), Gaps = 12/494 (2%) Strand=Plus/Plus Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGT 203901 ||| || ||||||||||||||||| | | || | | | | || |||||||||||||| Sbjct 2025316 GTCGACGGTGAACTGAATGGCGTTGGCCGACGGGCGGGTACGAAGGTAGTACATGCCGGT 2025375 Query 203902 CTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG-TTTGCTCACGTTGGGGT 203960 ||| || || || ||| ||||| | ||||||||||| || | | ||| ||| | Sbjct 2025376 CTTAAGACCACGCTTCCAGCCGTAAAAGTGCATGGAAGTGAGCTGAGAGAACGAAGGGTT 2025435 Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCA 204020 | | || ||| ||||| || ||||| |||||||| |||| | || || ||||| | Sbjct 2025436 C-GACAGGTGGATGTTGAGCGACTGCGACTGGTCGATAAAAGCACCACGGTCGGCGGCAA 2025494 Query 204021 TATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTGTGT 204079 | ||||| | |||||||||||||||||| || |||||| | | || || || | | Sbjct 2025495 GGTCGATAACTGCCTTCTGCGAAATCTCCCAGACAGTCTTGTAGATCGACT-TGATCTCA 2025553 Query 204080 TGAGGCACATCTTCC---CACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135 | || | |||| | || || |||||| || ||| || | | | | Sbjct 2025554 TCGGGAA----TTCCAGGAATGTGCTGGATCGAACCACCCGAGGCGATGACGAGCTGCTT 2025609 Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195 | | | || |||| | | | | |||| || || || | || |||| || || Sbjct 2025610 CATGTTGTCGTCCCAGAGGTCGAGGTTGATGAGGTCACGAAGGAGCCAGGGGCAGACGAC 2025669 Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| ||||| || || ||||| | |||| | | || | |||| | || ||||| Sbjct 2025670 CTGGAAGTCACCAGAGAGCACACGGCGGGAGTAGAGCATCGAGGTGTAAGGCTCGAAGCA 2025729 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||| ||| | |||||||| ||| || || |||||||| || | ||| || || Sbjct 2025730 CTCGTTCCAGCCAAGAATCTGAGAAGTGGAAGCAGTAGGCATGGGGGCGACGAGAAGCGA 2025789 Query 204316 GTTGCGCACACCGT 204329 |||||| || |||| Sbjct 2025790 GTTGCGAACGCCGT 2025803 Score = 93.3 bits (102), Expect = 7e-14 Identities = 283/432 (66%), Gaps = 4/432 (1%) Strand=Plus/Plus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 || ||| || ||||| || ||| || |||| ||||||||||| || | || | || Sbjct 2026558 CTTCATGAAGAGGTCAGGGACCCAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTC 2026617 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATG-TCGGCGTGCCACGGCTCTA 205283 | || ||||||| | ||| || ||| || || || || ||||| ||||| | Sbjct 2026618 CTTGCCGTGGTTCTTGCGGAGGTCAAGG-AAGTCGAAAACATCCGCATGCCAGGGCTCAA 2026676 Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343 | | ||| | || || || | |||||| ||||||||||| || || | ||| Sbjct 2026677 GGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCG 2026736 Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403 ||| | | | || ||||| || || | |||||||| | ||||| || | ||| Sbjct 2026737 CGTCGTAGGCACGGAGCATGGGGACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGT 2026796 Query 205404 CCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGA 205463 |||||| | || | | |||| ||| ||||| || |||| | ||||| || Sbjct 2026797 ACGAGCCCTTGGCACGAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGA 2026856 Query 205464 TCTGGGCGC-ACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC 205522 ||||||||| | ||||| || ||| ||||||||| |||| || |||||| || | Sbjct 2026857 TCTGGGCGCAAGTCTTG-AGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCG 2026915 Query 205523 ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTG 205582 || || |||| || | || || | | || || |||| |||||| || ||| Sbjct 2026916 ACGAGGAAGCATGACGACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAA 2026975 Query 205583 GCGTGGCTGAAG 205594 ||||| ||||| Sbjct 2026976 GCGTGAGTGAAG 2026987 >seq3 Length=3725192 Score = 107 bits (118), Expect = 3e-18 Identities = 171/241 (71%), Gaps = 7/241 (3%) Strand=Plus/Minus Query 159815 GGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG 159874 || ||||| |||| ||| ||||||||||| || || |||||||||||||| || | Sbjct 3008378 GGAAGCGCGTCCGTCAGGAACTCCTTCTCTATTTCCACCGCTTCGGTCACGATGGTGTAA 3008319 Query 159875 ACACGTTCGT-ACCCCGGCT-TGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGT 159932 || |||| | | || ||| | ||| || || | ||||||||||||||| Sbjct 3008318 ACTTCCTCGTCAGAGCAGCGGTGCTTGAGATGC---CCATAGA--GGAGGCACGCAAAGT 3008264 Query 159933 CGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGA 159992 || ||| || ||||| || |||||||||| ||| || || | | ||||| |||||| Sbjct 3008263 CGGTGTGAAGACCCTCATCTCGAGAGATGAGCTCATTCGAGAATGTAAGGCCACGCATGA 3008204 Query 159993 TCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCA 160052 || ||| ||||||||| || ||||| ||||| | || || ||||| ||||||| Sbjct 3008203 GACCGCGCTTTTTGAGCCAGAAGATGGCAGCAAATGATCCCGAGAAGAAGATGCCCTCCA 3008144 Query 160053 C 160053 | Sbjct 3008143 C 3008143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154921695680