Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq11 161 1e-34
seq2 123 2e-23
>seq11
Length=562504
Score = 161 bits (178), Expect = 1e-34
Identities = 370/556 (67%), Gaps = 12/556 (2%)
Strand=Plus/Minus
Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAG 132725
|||||| || |||||||| | | ||||||| |||| | | ||| ||||||||||
Sbjct 37220 CATAAAGTCGAAGGGGTTCGTCGAGTTGTAGATCTTGTCGTTGCCAAGGGCGACGAGCAG 37161
Query 132726 CCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACG 132785
| |||||| |||||||| |||||||| ||||| | || | || | ||
Sbjct 37160 GCGGTCGGCGACGAACTCAATGTATTGGCACATGAGACCAGCGTTCATACCGATGAGCGA 37101
Query 132786 CACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTC 132845
||| || ||||| ||||| || || || || || ||| || ||| || || |
Sbjct 37100 CACGGGGAGCGCCTCGGTAAGGAACTCCTGTTCAATCTTGACGGCCTCGCGGATAATCTT 37041
Query 132846 CCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTC 132905
| || | | | | ||| || | | ||| |||| | || || ||||||||
Sbjct 37040 CTCAATGAGGTTGGGGTGCGGGCGACGGCGGAGATGGGTGAAAAGCAGACAGGCAAAGTC 36981
Query 132906 GCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAG 132965
| || | |||||||| | || ||||| |||||| |||||| | ||||||||||||
Sbjct 36980 GGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGGCCGGGCATGAG 36921
Query 132966 GCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGAC 133025
||| || || |||||||| || || | ||| || ||| || || |||| || |||||
Sbjct 36920 GCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAAGATACCTTCGAC 36861
Query 133026 GGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAG 133085
||| ||||| || | |||||||| | || | | | | || ||||| || ||
Sbjct 36860 GGCGGCGAACGCAATGAGGCGCTCAGCAAAGGACGAGCGCTCGTCGGAAATCCAACGGAG 36801
Query 133086 CGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAG 133145
|||||| |||||||| | |||| ||| || || || |||||||| || || |||
Sbjct 36800 CGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCCTTGAA------GAG 36747
Query 133146 TTTCT-CTTCCG-----AGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGA 133199
| || | || | ||| | |||||||||||||||| || || | || ||
Sbjct 36746 GTACTGCCGGCGGGCGTTGTCACGAATGTAGGTGTCGATGAGGAGAGAGTAGGTCTCGGA 36687
Query 133200 GTGTACGTTCTCCATG 133215
||| | ||||||| ||
Sbjct 36686 GTGAATGTTCTCCCTG 36671
Score = 127 bits (140), Expect = 2e-24
Identities = 145/192 (76%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| ||||| ||| |||| |||||| | ||
Sbjct 29053 ATGCAGATCTTCGTCAAGACTCTCACAGGCAAGACCATTACCCTCGAGGTCGAGTCGTCC 29112
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || | || || | ||||| ||||| ||||| |||||||
Sbjct 29113 GACACTATCGACAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCA 29171
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | || ||||| ||||| || |||| || |||||| ||||||||
Sbjct 29172 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGACGGTCGTACCCTCTCGGACTACAA 29231
Query 38423 CATCCAAAAGGA 38434
||||||||||||
Sbjct 29232 CATCCAAAAGGA 29243
Score = 127 bits (140), Expect = 2e-24
Identities = 160/217 (74%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| || ||||| | || || ||| | ||
Sbjct 29281 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACTATCACTCTTGAAGTTGAGTCGTCC 29340
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || | || || | ||||| ||||| |||||| |||||||
Sbjct 29341 GACACTATCGACAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCA 29399
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | ||||||||| ||||| || |||| ||||| || |||||||||
Sbjct 29400 GCAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAA 29459
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||| || ||||| ||||| |||| | || || |||
Sbjct 29460 CATTCAGAAGGAGTCGACGTTGCACCTTGTTCTTCGT 29496
Score = 123 bits (136), Expect = 2e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| ||||| ||| |||| ||||| | |
Sbjct 28825 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACCCTCGAAGTCGAATCGTCG 28884
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| ||||| ||||| || || |||||||
Sbjct 28885 GACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAG 28944
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| ||||| | || ||||| ||||| || |||| || |||||| |||||||||
Sbjct 28945 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCTGACTACAAC 29004
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| ||||| |||| || ||| | || || |||
Sbjct 29005 ATCCAGAAGGAGTCGACCCTTCATCTTGTCCTCCGT 29040
Score = 105 bits (116), Expect = 7e-18
Identities = 148/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA- 38314
|| || || || |||||||| ||||||||| | || |||||| | | |||| | | |
Sbjct 28328 GTCAAGACTCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCTTCGGACACCATCGAC 28387
Query 38315 AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCAT 38374
|||| | || | || || | ||||| ||||| || || ||||||| ||||| |||||
Sbjct 28388 AACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCAT 28446
Query 38375 TTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434
| || || || ||||| || |||| || |||||| || ||||||||||| |||||
Sbjct 28447 CTTTGCCGGAAAGCAGCTCGAGGACGGTCGTACCCTCTCGGATTACAACATCCAGAAGGA 28506
Query 38435 AGCGACGCTGCATTTGGTGCTGCGT 38459
|||| || ||| | || || |||
Sbjct 28507 GTCGACCCTTCATCTCGTTCTCCGT 28531
Score = 98.7 bits (108), Expect = 1e-15
Identities = 141/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323
|| || |||||||| ||||| | || || ||| | | |||| | | | |||| | ||
Sbjct 28618 CTTACCGGCAAAACGATCACTCTTGAGGTTGAGTCTTCGGACACCATCGACAACG-TCAA 28676
Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383
| || |||| ||||| ||||| || || ||||||| ||||| ||||| | || ||
Sbjct 28677 GGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCATCTTTGCCGG 28736
Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443
||| ||||| || |||| || ||||| |||||||||||||| ||||| |||| ||
Sbjct 28737 CAAGCAGCTCGAGGACGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCT 28796
Query 38444 GCATTTGGTGCTGCGT 38459
||| | || || |||
Sbjct 28797 TCATCTTGTCCTCCGT 28812
>seq2
Length=3730214
Score = 123 bits (136), Expect = 2e-23
Identities = 144/192 (75%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA- 38314
|| || || ||||||||||| || |||||| |||| || ||| | |||||| | | |
Sbjct 3658491 GTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATCGAC 3658432
Query 38315 AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCAT 38374
|||| | || | || |||| ||||| ||||| || ||| ||||||| ||||| |||||
Sbjct 3658431 AACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCAT 3658373
Query 38375 TTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434
| ||| ||||| ||||| || || | |||||||| |||||||||||||| |||||
Sbjct 3658372 CTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCGGACTACAACATCCAGAAGGA 3658313
Query 38435 AGCGACGCTGCA 38446
|||| || ||
Sbjct 3658312 GTCGACCCTCCA 3658301
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172624939520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |