Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq11 161 1e-34 seq2 123 2e-23 >seq11 Length=562504 Score = 161 bits (178), Expect = 1e-34 Identities = 370/556 (67%), Gaps = 12/556 (2%) Strand=Plus/Minus Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAG 132725 |||||| || |||||||| | | ||||||| |||| | | ||| |||||||||| Sbjct 37220 CATAAAGTCGAAGGGGTTCGTCGAGTTGTAGATCTTGTCGTTGCCAAGGGCGACGAGCAG 37161 Query 132726 CCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACG 132785 | |||||| |||||||| |||||||| ||||| | || | || | || Sbjct 37160 GCGGTCGGCGACGAACTCAATGTATTGGCACATGAGACCAGCGTTCATACCGATGAGCGA 37101 Query 132786 CACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTC 132845 ||| || ||||| ||||| || || || || || ||| || ||| || || | Sbjct 37100 CACGGGGAGCGCCTCGGTAAGGAACTCCTGTTCAATCTTGACGGCCTCGCGGATAATCTT 37041 Query 132846 CCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTC 132905 | || | | | | ||| || | | ||| |||| | || || |||||||| Sbjct 37040 CTCAATGAGGTTGGGGTGCGGGCGACGGCGGAGATGGGTGAAAAGCAGACAGGCAAAGTC 36981 Query 132906 GCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAG 132965 | || | |||||||| | || ||||| |||||| |||||| | |||||||||||| Sbjct 36980 GGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGGCCGGGCATGAG 36921 Query 132966 GCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGAC 133025 ||| || || |||||||| || || | ||| || ||| || || |||| || ||||| Sbjct 36920 GCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAAGATACCTTCGAC 36861 Query 133026 GGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAG 133085 ||| ||||| || | |||||||| | || | | | | || ||||| || || Sbjct 36860 GGCGGCGAACGCAATGAGGCGCTCAGCAAAGGACGAGCGCTCGTCGGAAATCCAACGGAG 36801 Query 133086 CGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAG 133145 |||||| |||||||| | |||| ||| || || || |||||||| || || ||| Sbjct 36800 CGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCCTTGAA------GAG 36747 Query 133146 TTTCT-CTTCCG-----AGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGA 133199 | || | || | ||| | |||||||||||||||| || || | || || Sbjct 36746 GTACTGCCGGCGGGCGTTGTCACGAATGTAGGTGTCGATGAGGAGAGAGTAGGTCTCGGA 36687 Query 133200 GTGTACGTTCTCCATG 133215 ||| | ||||||| || Sbjct 36686 GTGAATGTTCTCCCTG 36671 Score = 127 bits (140), Expect = 2e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||| ||| |||| |||||| | || Sbjct 29053 ATGCAGATCTTCGTCAAGACTCTCACAGGCAAGACCATTACCCTCGAGGTCGAGTCGTCC 29112 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | ||||| ||||| ||||| ||||||| Sbjct 29113 GACACTATCGACAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCA 29171 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || ||||| ||||| || |||| || |||||| |||||||| Sbjct 29172 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGACGGTCGTACCCTCTCGGACTACAA 29231 Query 38423 CATCCAAAAGGA 38434 |||||||||||| Sbjct 29232 CATCCAAAAGGA 29243 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| || ||||| | || || ||| | || Sbjct 29281 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACTATCACTCTTGAAGTTGAGTCGTCC 29340 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | ||||| ||||| |||||| ||||||| Sbjct 29341 GACACTATCGACAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCA 29399 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||||||||| ||||| || |||| ||||| || ||||||||| Sbjct 29400 GCAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAA 29459 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| ||||| |||| | || || ||| Sbjct 29460 CATTCAGAAGGAGTCGACGTTGCACCTTGTTCTTCGT 29496 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||| ||| |||| ||||| | | Sbjct 28825 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACCCTCGAAGTCGAATCGTCG 28884 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || || ||||||| Sbjct 28885 GACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAG 28944 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || ||||| ||||| || |||| || |||||| ||||||||| Sbjct 28945 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCTGACTACAAC 29004 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| |||| || ||| | || || ||| Sbjct 29005 ATCCAGAAGGAGTCGACCCTTCATCTTGTCCTCCGT 29040 Score = 105 bits (116), Expect = 7e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA- 38314 || || || || |||||||| ||||||||| | || |||||| | | |||| | | | Sbjct 28328 GTCAAGACTCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCTTCGGACACCATCGAC 28387 Query 38315 AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCAT 38374 |||| | || | || || | ||||| ||||| || || ||||||| ||||| ||||| Sbjct 28388 AACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCAT 28446 Query 38375 TTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | || || || ||||| || |||| || |||||| || ||||||||||| ||||| Sbjct 28447 CTTTGCCGGAAAGCAGCTCGAGGACGGTCGTACCCTCTCGGATTACAACATCCAGAAGGA 28506 Query 38435 AGCGACGCTGCATTTGGTGCTGCGT 38459 |||| || ||| | || || ||| Sbjct 28507 GTCGACCCTTCATCTCGTTCTCCGT 28531 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 || || |||||||| ||||| | || || ||| | | |||| | | | |||| | || Sbjct 28618 CTTACCGGCAAAACGATCACTCTTGAGGTTGAGTCTTCGGACACCATCGACAACG-TCAA 28676 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | || |||| ||||| ||||| || || ||||||| ||||| ||||| | || || Sbjct 28677 GGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCATCTTTGCCGG 28736 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||| ||||| || |||| || ||||| |||||||||||||| ||||| |||| || Sbjct 28737 CAAGCAGCTCGAGGACGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCT 28796 Query 38444 GCATTTGGTGCTGCGT 38459 ||| | || || ||| Sbjct 28797 TCATCTTGTCCTCCGT 28812 >seq2 Length=3730214 Score = 123 bits (136), Expect = 2e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA- 38314 || || || ||||||||||| || |||||| |||| || ||| | |||||| | | | Sbjct 3658491 GTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATCGAC 3658432 Query 38315 AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCAT 38374 |||| | || | || |||| ||||| ||||| || ||| ||||||| ||||| ||||| Sbjct 3658431 AACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCAT 3658373 Query 38375 TTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | ||| ||||| ||||| || || | |||||||| |||||||||||||| ||||| Sbjct 3658372 CTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCGGACTACAACATCCAGAAGGA 3658313 Query 38435 AGCGACGCTGCA 38446 |||| || || Sbjct 3658312 GTCGACCCTCCA 3658301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172624939520