Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq12 309 4e-79 seq1 167 3e-36 >seq12 Length=418454 Score = 309 bits (342), Expect = 4e-79 Identities = 551/800 (69%), Gaps = 7/800 (1%) Strand=Plus/Plus Query 7014 CCGTTAAG-ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATC 7072 ||||| || || | || ||||| | || ||||| ||||| ||||| |||||||| || Sbjct 115373 CCGTTGAGGATCGAAGCCTGGACGGCGGCACCGTAGGCGACGGCCTCGTCGGGGTTGATG 115432 Query 7073 GTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATT 7132 | || | || ||| || || || | ||| | || || || ||||| Sbjct 115433 GAACGGTTGGGCTCACGGCCGGAGAACATGTCGGAGACCATCTTCTGGATCTTGGGGATA 115492 Query 7133 CGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCT 7192 || ||||| ||||| || | ||||| || || || ||| || || ||||| ||||| Sbjct 115493 CGGGTCGAGCCACCAACGAGGACGATCTCGTTGACCGACGACTTGTCAATCTTCGAGTCA 115552 Query 7193 CGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCA 7252 || || || ||||| || |||||| ||||| | |||| || || ||||| Sbjct 115553 CGGAGGACCTTCTCGACGGGCTCCATAGTGGAGCGGAAGAGGTCCTGGCAGAGCTCCTCG 115612 Query 7253 AAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCA 7312 ||||| |||||||| || || || ||||| |||| ||||||| | | ||| || || || Sbjct 115613 AAACGGGCACGGGTGATCGAGGTGTAGAAGTCAATGCCGTCGAAGAGCGAGTCGATCTCG 115672 Query 7313 ATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAA 7372 || | || || || | || || | || ||||| || |||||||| || || || | Sbjct 115673 ATCGAGGTCTGAGCGGCAGACGAAAGGGTGCGCTTAGCACGCTCACAAGCAGTGCGGAGG 115732 Query 7373 CGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCA 7432 ||||| || ||||| | ||| ||||| || ||||| | || || || ||||| | Sbjct 115733 CGACGGAGAGCACGAGCGTTGGAAGAAATGTCCTTCTTGTTCTTGCGCTTGAACTCCTGG 115792 Query 7433 GAGAAGTG-TCGA--AGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489 |||||| | || ||| | | || || || |||||||| | ||| || || || Sbjct 115793 ACGAAGTGGTTGACAAGGCGGTTG---TCAAAGTCCTCACCACCAAGGTGGGTGTCACCA 115849 Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549 ||||| || ||||| || |||||||| | |||||| | | | ||| || || || ||| Sbjct 115850 GCGGTGGCCTTGACCTCGAAGATACCCTCCTCAATGGTAAGGAGCGAGACGTCGAAAGTA 115909 Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609 |||||||| ||||| |||||||| |||||| | || | || ||||| ||||||||| Sbjct 115910 CCACCACCAAGGTCGAAAATGAGAACGTTCTTCTCACCCTCGGACTTCTTGTCGAGACCG 115969 Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669 || |||||||| || || || || || || || ||||| || || || ||||| || Sbjct 115970 TAAGCGATAGCGGCGGCGGTGGGCTCGTTGATGATACGGAGGACGTCAAGACCAGCGATG 116029 Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729 || | || || || || || || || || || ||||| |||||||| ||||| || ||| Sbjct 116030 GTACCGGCGTCCTTGGTGGCCTGACGCTGAGAGTCGTTGAAGTAGGCGGGGACGGTGACG 116089 Query 7730 ACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGA 7789 || || | |||| | ||| || || | || ||| | || ||||| ||| | || Sbjct 116090 ACGGCCTTGCTGACAGTGCCACCAAGGTAGGCCTCGGCGGTCTCCTTCATCTTGATGAGG 116149 Query 7790 ACCATCGATGAAATCTCTTC 7809 ||||| || || ||||| || Sbjct 116150 ACCATGGACGAGATCTCCTC 116169 Score = 174 bits (192), Expect = 2e-38 Identities = 199/267 (75%), Gaps = 3/267 (1%) Strand=Plus/Plus Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 ||| ||||| | | ||| | ||||| ||| ||||||| |||| | ||||| | Sbjct 116286 GATGACCTTGAAGGGCCAGTGCTTCATGTCGGACTGGACCTCGGGGTCGGCGAACTTGCG 116345 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 |||||||||||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 116346 GCCGATAAGACGCTTGGCGTCGAAGACGGTGTTGTAGGGGTTCATGGCGACCTGGTTCTT 116405 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 || ||||| ||||| ||||| ||| | | || || ||||| || || ||||| || Sbjct 116406 GGCGGCGTCACCGATGAGACGCTCAGAGT---CGGTGAAGGCGACATAGGAGGGGGTAGT 116462 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || || || |||||||| || ||||| || ||||||||||| ||||||||| |||| || Sbjct 116463 GCGGTTACCCTGGTCGTTGGCGATAATCTCAACGCGGTCGTTCTGCCAGACGGCGACACA 116522 Query 8116 CGAATACGTTGTTCCTAAATCAATACC 8142 ||| || || || || | ||| ||||| Sbjct 116523 CGAGTAGGTGGTGCCGAGATCGATACC 116549 >seq1 Length=4014173 Score = 167 bits (184), Expect = 3e-36 Identities = 325/478 (68%), Gaps = 4/478 (1%) Strand=Plus/Plus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| ||||| |||||||| ||| | | |||| || || || | ||| | ||| || Sbjct 1522252 TCCTCGAAACGGGCACGGGTGATGTTGGAAGAGAAGTCGACACCCTGGTAGAGCGAGTCG 1522311 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 | |||| ||| || || | ||| || | || ||||| || |||||||| || | Sbjct 1522312 ACCTCAACGGTGGTCTGGGTAACCGACGAGAGAGTGCGCTTGGCACGCTCACAGGCGGAA 1522371 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426 || | ||| || || ||||| | || | || || || ||| | || || || ||| Sbjct 1522372 CGGAGACGGCGGAGAGCACGGGCGTCGTCCGAGATGTCGAGCTTGTTCTTGCGCTTGAAC 1522431 Query 7427 TCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCC 7486 || |||||| |||||| | ||||| || |||||||| | ||| || || Sbjct 1522432 TCGGTCTTGAAGTGCTCAAGGAGGGTGTTGTCGAAGTCCTCACCACCAAGGTGGGTGTCA 1522491 Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAAC 7546 || || || || ||||| | |||| ||| || || | | ||| ||||| || Sbjct 1522492 CCGGCAGTGGCCTTGACGGCGAAGACACCACCAGTGATCGAGAGGAGCGAGACATCGAAA 1522551 Query 7547 GTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG--TTCTTATCGA 7604 ||||||||||| ||||| || ||||| |||||| | || || ||| | |||| |||| Sbjct 1522552 GTACCACCACCAAGGTCGAAGATGAGGACGTTCTTCTCCTC--CTTCGACTTCTGGTCGA 1522609 Query 7605 GACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAG 7664 ||||||| || || || || || || || || || || ||||| ||| | ||||| | Sbjct 1522610 GACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGAACCTCGAGGCCGG 1522669 Query 7665 CAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 |||| | | || || || || || | || ||||| ||||| |||||||| ||||| Sbjct 1522670 CAATGGCACCAGCGTCCTTGGTAGCGAGACGCTGCGAGTCGTTGAAGTAGGCGGGGAC 1522727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132577703520