Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 165 1e-35 seq11 123 3e-23 seq3 109 7e-19 >seq1 Length=4014173 Score = 165 bits (182), Expect = 1e-35 Identities = 675/1054 (64%), Gaps = 25/1054 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| | ||||| || | ||||||||||| || || | || || || Sbjct 2027079 CCGCAGCACATGATTATGCGTGTTTCCATCGGTATCCACGGTGACAACATCGACAAGGTC 2027020 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || |||||| | | || |||| ||||| | || |||||||| Sbjct 2027019 ATTGAGACGTACAACCTCATGTCCGAGCGCTAC-TTCACTCACGCTTCCCCGACCCTCTT 2026961 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||||||||| || || || ||||| || ||||| | || | ||||| || Sbjct 2026960 CAACGCTGGTACTCCCCACCCTCAGATGTCGTCATGCTTCCTCGTCGCTATGAAGGACGA 2026901 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| | ||||| |||| ||| |||| || ||||| ||||| ||| ||||| Sbjct 2026900 CTCGATCGACGGCATCTACGACACCCTCAAGACTTGCGCCCAGATCTCCAAGACTGCTGG 2026841 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGT--ATTAGAGGTACA 111908 ||| || || | ||||| || | | | |||| | | ||||| ||| || || Sbjct 2026840 TGGCATTGGTCTCCACATTCACAACATTCGTGCCA--AGGGCTCGTACATTGCTGGAACC 2026783 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || ||| | || | ||||| | || ||||| || | | |||| || || || || Sbjct 2026782 AACGGTTACTCCAACGGTATCGTCCCCATGCTCCGTGCCTACGACGCGACCGCCCGTTAC 2026723 Query 111969 GTAAACCAAGCTGG---GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 || |||| | ||| ||| || | | || |||| |||||||| ||||| Sbjct 2026722 GTTGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTTGAGCCCTGGCAT 2026663 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 |||||| | | || |||||||| | || ||||| || | ||||||| || Sbjct 2026662 GCGGATGTTTTCGACTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCG 2026603 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 || ||||| |||| |||||||||| | || || |||||||||||| | || |||| Sbjct 2026602 CGTGATCTGTTCTACGCTCTCTGGGTCCCTGACCTCTTCATGAAGCGTGTCGAGGCCGAC 2026543 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA--TGCCGTGGGTG 112203 || | ||| | ||| | || || | | || || ||||| |||| | | | | | Sbjct 2026542 GGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCTGGTCTTGCCGACGTTCACTCG--G 2026485 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAG---GAAG---AAAGTCGGGCGACTGCGA 112257 || ||||||| |||| ||| ||||||||| || | | |||| ||| | Sbjct 2026484 AGAAGTTTGAGACCCTGTACCAGAAGTACGAGCGTGAGGGCAAGGGTCGCAAGACCATCA 2026425 Query 112258 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317 || |||| || | ||| || ||||| || | || |||||||||||| | Sbjct 2026424 AGG-CCCAGAAGC-----TCTGGTTTGCCATTCTTGAGGCCCAGACCGAGACTGGTGGCC 2026371 Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377 | | || || ||||| || || |||| ||| ||| || || | |||| | Sbjct 2026370 CCTTCATCCTCTACAAGGATGCTGCCAACCGCAAGTCTAACCAGCAGCACCTGGGCACTA 2026311 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437 ||||| ||||||||||| || || ||| | || | | || ||| || | Sbjct 2026310 TCAAGTCGTCCAACCTCTGCACTGAGATCATCGAGTACTCTTCTCCCGACGAGGTTGCCG 2026251 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 112497 | || ||||| || || || || || ||| || ||||| |||| | || | || Sbjct 2026250 TCTGCAACCTTGCCTCCATTGCCCTTCCCGCGTTCGTGGACTTTGAGAACAGCACCTATG 2026191 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 | | | || || ||||| | || || ||| || || ||||| || | || || Sbjct 2026190 ACTTCAAGAAGCTTCACGAGATCACCAAGGTTGTTACCAAGAACCTTGACTGCGTCATCT 2026131 Query 112558 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 | || | ||||||||| || || || || || ||| | || || || | | Sbjct 2026130 CGCGCAACTACTACCCCGTTCAGGAGGCCAAGAACTCGAACATGCGCCATCGCCCCGTCG 2026071 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT 112651 ||||||||||||| ||||| || || | ||||| Sbjct 2026070 GTCTCGGTGTCCAGGGTCTTGCCGACGCCTTCAT 2026037 Score = 95.1 bits (104), Expect = 2e-14 Identities = 321/497 (65%), Gaps = 20/497 (4%) Strand=Plus/Minus Query 175841 CCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAAG 175900 || ||||| ||||| || | ||||| |||||||||| ||| | || || | |||| | Sbjct 1598089 CCTGTACCAATACCATCGGCGCCGTTGACGAGAACCAAGGGTACGGTAGGGAGGTAGTAC 1598030 Query 175901 TCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGGA 175960 || ||||| || | |||||| ||| | | ||| ||||| || || || || | Sbjct 1598029 TCGGGCTCGATCTGTTCACCATCTTCAACAAGATATTTGAGGATCGGGTCGTCGTCCTTG 1597970 Query 175961 TCAAAGA---------TCTTTCGGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTT 176011 | |||| || | |||| | ||||||| | |||| || |||| | Sbjct 1597969 TGGAAGAGGAGGCGAGTCATGCGGGGAATATTTGTGAAAAT-GTAACGAGCG--CTCGCT 1597913 Query 176012 TGAGACGCATCCTTACCACCCATGAGA-CGCGTACCAAACTGACCACACGGCTCAAGAAG 176070 ||||||||||| ||| ||| || |||||||||||||| ||||| || || Sbjct 1597912 ------GCATCCTTACCTCCC-TGATTGCGAGTACCAAACTGACCGTTGGGCTCGAGGAG 1597860 Query 176071 ATTGATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGA 176130 |||||| ||||| |||| ||| | ||| | || || ||| || |||| Sbjct 1597859 ATTGATGTTGTTACTGCCCACAAAGTTTTGCGCGAGACCCACGATAGTGGCCTGGAGACT 1597800 Query 176131 GACTTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTT 176190 ||| |||||||| || || ||| ||| | ||| | | || ||| || || || Sbjct 1597799 CTGTTCGCCGTGGTGATATGCTGTCTGCTCAGAAACATAACCACTCAGCTGAGCAACCTT 1597740 Query 176191 CATCTCATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTT 176250 || ||| ||| ||||| | |||| | || | ||||||||||| |||||| Sbjct 1597739 CAGATCAGAGGTGATCTTCTTTTTGAAAGCACCATAGAGGACCTTGCGTTGACCAGGCTT 1597680 Query 176251 GAGACCATCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAG 176310 ||| |||||||| | || |||||||| | ||| |||| |||| || ||| Sbjct 1597679 GAGGCCATCCGCAACCGATGGTATAGAACGGATGTTGTCAGCCATGGAGAAGAGGATGAG 1597620 Query 176311 GTCCTTGTGTACAAAGT 176327 ||||||| || |||| Sbjct 1597619 TTCCTTGTTCACGAAGT 1597603 >seq11 Length=562504 Score = 123 bits (136), Expect = 3e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 |||||||||||||| ||| | || || || || || |||||||| |||||||| || Sbjct 36828 TCCTTTGCTGAGCGCCTCATTGCGTTCGCCGCCGTCGAAGGTATCTTTTTCTCTGGCTCG 36887 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 || | | || | |||||||||||||| || |||||||| || ||| ||||||||| Sbjct 36888 TTTGCCTCGATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCACTTTCTCCAAC 36947 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||| ||||| ||||||||||| || ||| || ||||| Sbjct 36948 GAGCTCATCTCGCGTGACGAGGGTCTTCACACCGACTTTGC 36988 >seq3 Length=3725192 Score = 109 bits (120), Expect = 7e-19 Identities = 166/231 (72%), Gaps = 9/231 (4%) Strand=Plus/Plus Query 102105 CAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG 102164 ||| |||| || ||||||| |||||| || || ||||| | |||| | || | Sbjct 3008047 CAATCAGTCCCCTGTATTCGAAAGAAGGCCGACTGGGCACTCAAGTACAT-----CACGG 3008101 Query 102165 TCG-CGTTCCTTTGCTGAGC-GACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCT 102222 || | | || || | | | |||| |||| ||||| ||||| ||||| |||||||||| Sbjct 3008102 ACGACATGCCGTTCCGCACCAGACTGATCGCCTTTGCATGTGTGGAGGGCATCTTCTTCT 3008161 Query 102223 CTGGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC 102281 | || || || ||| || || | |||||||| ||||| |||||||||| || || Sbjct 3008162 CGGGATCATT-TGCTGCCATCTTCTGGCTCAAAAAGCGCGGTCTCATGCGTGGCCTTACA 3008220 Query 102282 TTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 ||||| || ||||| |||||||| || ||||| || ||| || |||||| Sbjct 3008221 TTCTCGAATGAGCTCATCTCTCGAGATGAGGGTCTTCACACCGACTTTGCG 3008271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742182740160