Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 232 8e-56 seq10 132 6e-26 seq3 109 6e-19 seq11 98.7 1e-15 >seq1 Length=4014173 Score = 232 bits (256), Expect = 8e-56 Identities = 1146/1811 (63%), Gaps = 39/1811 (2%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 ||||| || ||||| || || || |||||| |||||| |||| | ||||| |||| | Sbjct 2025356 CGAAGGTAGTACATGCCGGTCTTAAGACCACGCTTCCAGCCGTAAAAGTGCATGGAAGTG 2025415 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 || | || | | || || || | ||| | |||||| ||||| ||||| || Sbjct 2025416 AGCTGAGAGAACGAAGGGTTCGACAGGTGGATGTTGAGCGACTGCGACTGGTCGATAAAA 2025475 Query 109528 CGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTG 109587 |||||| || || || | |||||| | ||| || ||| ||||||||||||||| Sbjct 2025476 GCACCACGGTCGGCGGCAAGGTCGATAACTGCCTTCTGCGAAATCTCCCAGACAGTCTTG 2025535 Query 109588 TACAAATTCTTGATATCATCGGGAATGTCCACGA-TGTTTTGAATAGAGCCACCAGCCTT 109646 || | |||||| ||||||||||| |||| || ||| || || || ||||| | Sbjct 2025536 TAGATCGACTTGATCTCATCGGGAAT-TCCAGGAATGTGCTGGATCGAACCACCCGAGGC 2025594 Query 109647 CACCATGAGATCCTTCATCTCTTTCGACC-AGAGACCGACCTTTTTGAGATCGTCAACAA 109705 | | ||| | |||||| | | ||| || |||| ||| || |||| |||| || Sbjct 2025595 GATGACGAGCTGCTTCATGT-TGTCGTCCCAGAGGTCGAGGTTGATGAG---GTCACGAA 2025650 Query 109706 GATGCTTGTTGACCACGACA---AATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAG 109762 | || | | ||||| || ||||||| || || ||| ||||| | | Sbjct 2025651 GGAGCCAGGGGCAGACGACCTGGAAGTCACCAGAGAGCACACGGCGGGAGTAGAGCATCG 2025710 Query 109763 TCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCA 109822 ||||| || ||||| ||||| || ||| || || || | ||||||||| || |||| Sbjct 2025711 AGGTGTAAGGCTCGAAGCACTCGTTCCAGCCAAGAATCTGAGAAGTGGAAGCAGTAGGCA 2025770 Query 109823 TGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGT 109882 |||| || | |||||| ||| || | || ||| | | | |||||| | ||| Sbjct 2025771 TGGGGGCGACGAGAAGCGAGTTGCGAACGCCGTTCTTGGCGATCTTCTCACGGAGCTCGT 2025830 Query 109883 CCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACAC 109942 |||| | | | | | || | |||| | || || || | Sbjct 2025831 CCCAGTTCCAGAGGTCGGTGGGGATA------CGGCCCCAAAGGTCAAACTGGAGCTTGC 2025884 Query 109943 CCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGG 110002 ||| | || ||||||| | | ||| | || | ||| ||||| ||| Sbjct 2025885 CCTGCGAGATGGGCGAACCCTCGTATGAAGGGTAGGTTCCAACCTCCTGGGCCATCTCAC 2025944 Query 110003 ATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAG 110062 | || ||||| || || || || || || ||||| || || || || | |||||| Sbjct 2025945 ACGACGCCTCGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCTGGCGAG 2026004 Query 110063 ACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACAC 110122 | |||||||||| | | || || | || || |||||||| |||| Sbjct 2026005 CGGCAGGCGAGTCGAAGGGCATGCGGAGGGCCATGAAGGCGTCGGCAAGACCCTGGACAC 2026064 Query 110123 CGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGT 110182 ||||||| | ||||||||| |||||| ||| || | |||||||| ||| Sbjct 2026065 CGAGACCGACGGGGCGATGGCGCATGTTCGAGTTCTTGGCCTCCTGAACGGGGTAGTAGT 2026124 Query 110183 TGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGT 110242 |||| |||||| | | || ||||| || ||| ||| ||||| || || || || | Sbjct 2026125 TGCGCGAGATGACGCAGTCAAGGTTCTTGGTAACAACCTTGGTGATCTCGTGAAGCTTCT 2026184 Query 110243 CGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGAT 110302 | | || | || | |||| | || | ||| || ||||| || ||||| | Sbjct 2026185 TGAAGTCATAGGTGCTGTTCTCAAAGTCCACGAACGCGGGAAGGGCAATGGAGGCAAGGT 2026244 Query 110303 TGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAAC 110362 |||| || | | |||||| | ||| || | || || || || | |||||| Sbjct 2026245 TGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCGATGATCTCAGTGCAGAGGTTGGACG 2026304 Query 110363 TCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCA 110422 ||| || |||| || || ||| || || ||| |||| |||||||| ||||| | Sbjct 2026305 ACTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGGTTGGCAGCATCCTTGTAGAGGA 2026364 Query 110423 TGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGG 110482 || | ||| |||||| || ||||| | || |||||||| ||| | || | | Sbjct 2026365 TGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGAATGGCAAACCAGA-----GCTTCTG 2026419 Query 110483 GGAC-AGTTGCGTTAGCGAGACCTT--CCTC---CTCGTACTTGGTGTACAAGTCCTCAA 110536 || | | || | |||| |||| |||| ||||||||| ||||| | ||||| Sbjct 2026420 GGCCTTGATGGTCTTGCGA-CCCTTGCCCTCACGCTCGTACTTCTGGTACAGGGTCTCAA 2026478 Query 110537 ATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAAT 110596 | | || || || || | |||||| || | |||| || | ||||| ||| | Sbjct 2026479 ACTTCTCCGAGTGAACGTCGGCAAGACCAGGGCACTCGGCGGGGCACATGAGGGTCCAGT 2026538 Query 110597 TTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGT 110656 || | |||| || | ||||||||| |||||||| | ||| | || |||| || | Sbjct 2026539 CACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGGACCCAGAGAGCGTAGAACAGAT 2026598 Query 110657 CACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATAT 110716 |||| ||| |||| || | || ||||| ||| || || | ||||| | | || Sbjct 2026599 CACGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAAGTCGAAAACAT 2026658 Query 110717 CCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACG------ACCCGCCT 110770 ||| ||||| || || || |||| || | || || | | || || ||| Sbjct 2026659 CCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACC---AGGGCGCTTGTTGCCACCCT 2026715 Query 110771 GGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATT 110830 ||| ||| || || || || || | | || | | |||||| || | || || | ||| | Sbjct 2026716 GGTCAACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATGGGGACGATACCGTTGGAGT 2026775 Query 110831 GACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAA 110890 ||| || || || ||| || ||||||||||||| ||| || || | ||||| Sbjct 2026776 AACCGTTGGTTCCAGCAATGTACGAGCCCTTGGCACGAATGTTGTGAATGTGGAGACCAA 2026835 Query 110891 TACCACCCGCCCACTTACTAATTTGTGCAC-ACTCTGTGAGTGTACCATAAATACCATCA 110949 | ||||| || ||| || || || | | ||| |||| || | || || || || Sbjct 2026836 TGCCACCAGCAGTCTTGGAGATCTGGGCGCAAGTCT-TGAGGGTGTCGTAGATGCCGTCG 2026894 Query 110950 ATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCC 111009 ||||| || |||| | || | || ||||| || ||||||||||| | || || || Sbjct 2026895 ATCGAGTCGTCCTTCATAGCGACGAGGAAGCATGACGACATCTGAGGGTGGGGAGTACCA 2026954 Query 111010 GCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTG 111069 || |||||||| || || | || ||| |||| | | |||||| |||||| || Sbjct 2026955 GCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGCGCTCGGACATGAGGTTGTACGTC 2027014 Query 111070 TCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATAT 111129 || | | | | | | |||||| ||||| |||| ||| ||||| | ||| | Sbjct 2027015 TCAATGACCTTGTCGATGTTGTCACCGTGGATACCGATGGAAACACGCATAATCATGTGC 2027074 Query 111130 TGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTG 111189 || || ||| | ||| || |||| ||| || || ||| ||||||||| Sbjct 2027075 TGCGGACGCTCGGCCACCTTGCCGTCAATGCGCAAGAGATATGAGCGCTCGAGGGTCTTG 2027134 Query 111190 AGACCAAAGTA 111200 | ||| ||||| Sbjct 2027135 AAACCGAAGTA 2027145 >seq10 Length=825374 Score = 132 bits (146), Expect = 6e-26 Identities = 329/488 (67%), Gaps = 25/488 (5%) Strand=Plus/Plus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||| | ||| |||||||| || || || | || || || || | |||| |||||| Sbjct 199199 AATGTGACGGTCGAAACGGCCGGGACGCATAAGCGCCGGGTCGAGGACATCGGGACGGTT 199258 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATTGTC---GAAACCGTCCATTTCTGTGAG 11612 ||| |||| | || |||||| ||| ||| | ||| |||||||| || || Sbjct 199259 GGTACCGGCCAGAACGACAATGTG---CTCCTTGCCACTGAAGCCGTCCATCTCAACCAG 199315 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATAC------CACCTGCCGA 11666 ||||||||||| ||| || ||||| ||||| | || || | | |||| Sbjct 199316 AAGCTGGTTGAGGGTCGACTCGCGCTCGTCGTTACCGC-CAAACTGTCCGCCCTTGCC-- 199372 Query 11667 ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACG 11726 |||| ||| |||| ||||||||||||||||| || | ||| || || ||| || Sbjct 199373 ACGCGCCTTTCCGATTGCGTCAATCTCATCGATAAAGATGATGCAGGGAGCGTTCTTCCG 199432 Query 11727 TGCCTGTTCGAAA-AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGA 11785 || || ||| || ||||| |||||| | || ||||| |||||||| || || | Sbjct 199433 CGCA-GTGGAAAACAGGTCACGGACACGCGAGGGACCGACACCGACGAACATTTCGACAA 199491 Query 11786 AGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCG 11844 | | | | ||| || || | ||| || || || | |||||| || | || || Sbjct 199492 ACTCCGATCCGGAA-ACCGACAGGAACGGCACCTTGGCCTCACCGGCAGTCGCCTTTGCA 199550 Query 11845 AGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCA 11904 || |||||||| || ||||| |||| || | ||||| ||| || ||||| ||||||||| Sbjct 199551 AGCAGAGTCTTTCCGGTACCGGGTGGGCCGGAGAGAATGGCACCGCGGGGAATCTTGGCA 199610 Query 11905 CC--ACTTC-CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCC 11961 || |||| | | | | | |||| ||||||||| | |||| |||| || ||| Sbjct 199611 CCGAGCTTCTCGTACTTGGAC---GGCTCCTTGAGGAACTTGACAAACTCCATAATCTCC 199667 Query 11962 TCCTTGGC 11969 |||||||| Sbjct 199668 TCCTTGGC 199675 >seq3 Length=3725192 Score = 109 bits (120), Expect = 6e-19 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| || ||||| ||||||||||||||||| ||| ||| ||| ||||||| || Sbjct 3008258 TGAAGACCCTCATCTCGAGAGATGAGCTCATTCGAGAATGTAAGGCCACGCATGAGACCG 3008199 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | || || ||||| ||||||||| ||| ||| || |||||||||||||||||||| Sbjct 3008198 CGCTTTTTGAGCCAGAAGATGGCAGCAAATGATCCCGAGAAGAAGATGCCCTCCACACAT 3008139 Query 119628 GCGAAAGCGA 119637 || || |||| Sbjct 3008138 GCAAAGGCGA 3008129 >seq11 Length=562504 Score = 98.7 bits (108), Expect = 1e-15 Identities = 170/244 (70%), Gaps = 5/244 (2%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||||| || || || || ||||||||||| || ||| || || Sbjct 36989 GGCAAAGTCGGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGGCC 36930 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | ||||| ||||| ||||| | ||| ||||| || ||||| Sbjct 36929 GGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAAGAT 36870 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTCG---A 119670 || || || |||||| || | || |||||||| ||||| |||| || |||| | Sbjct 36869 ACCTTCGACGGCGGCGAACGCAATGAGGCGCTCAGC-AAAGGACGAGCGCTCGTCGGAAA 36811 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGA 119730 ||| ||| ||||||| |||||| || |||||||||| || | |||||| | || Sbjct 36810 TCCAACGGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCCTTGA 36751 Query 119731 AAAG 119734 | || Sbjct 36750 AGAG 36747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975793858400