Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq1 232 8e-56
seq10 132 6e-26
seq3 109 6e-19
seq11 98.7 1e-15
>seq1
Length=4014173
Score = 232 bits (256), Expect = 8e-56
Identities = 1146/1811 (63%), Gaps = 39/1811 (2%)
Strand=Plus/Plus
Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467
||||| || ||||| || || || |||||| |||||| |||| | ||||| |||| |
Sbjct 2025356 CGAAGGTAGTACATGCCGGTCTTAAGACCACGCTTCCAGCCGTAAAAGTGCATGGAAGTG 2025415
Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527
|| | || | | || || || | ||| | |||||| ||||| ||||| ||
Sbjct 2025416 AGCTGAGAGAACGAAGGGTTCGACAGGTGGATGTTGAGCGACTGCGACTGGTCGATAAAA 2025475
Query 109528 CGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTG 109587
|||||| || || || | |||||| | ||| || ||| |||||||||||||||
Sbjct 2025476 GCACCACGGTCGGCGGCAAGGTCGATAACTGCCTTCTGCGAAATCTCCCAGACAGTCTTG 2025535
Query 109588 TACAAATTCTTGATATCATCGGGAATGTCCACGA-TGTTTTGAATAGAGCCACCAGCCTT 109646
|| | |||||| ||||||||||| |||| || ||| || || || ||||| |
Sbjct 2025536 TAGATCGACTTGATCTCATCGGGAAT-TCCAGGAATGTGCTGGATCGAACCACCCGAGGC 2025594
Query 109647 CACCATGAGATCCTTCATCTCTTTCGACC-AGAGACCGACCTTTTTGAGATCGTCAACAA 109705
| | ||| | |||||| | | ||| || |||| ||| || |||| |||| ||
Sbjct 2025595 GATGACGAGCTGCTTCATGT-TGTCGTCCCAGAGGTCGAGGTTGATGAG---GTCACGAA 2025650
Query 109706 GATGCTTGTTGACCACGACA---AATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAG 109762
| || | | ||||| || ||||||| || || ||| ||||| | |
Sbjct 2025651 GGAGCCAGGGGCAGACGACCTGGAAGTCACCAGAGAGCACACGGCGGGAGTAGAGCATCG 2025710
Query 109763 TCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCA 109822
||||| || ||||| ||||| || ||| || || || | ||||||||| || ||||
Sbjct 2025711 AGGTGTAAGGCTCGAAGCACTCGTTCCAGCCAAGAATCTGAGAAGTGGAAGCAGTAGGCA 2025770
Query 109823 TGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGT 109882
|||| || | |||||| ||| || | || ||| | | | |||||| | |||
Sbjct 2025771 TGGGGGCGACGAGAAGCGAGTTGCGAACGCCGTTCTTGGCGATCTTCTCACGGAGCTCGT 2025830
Query 109883 CCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACAC 109942
|||| | | | | | || | |||| | || || || |
Sbjct 2025831 CCCAGTTCCAGAGGTCGGTGGGGATA------CGGCCCCAAAGGTCAAACTGGAGCTTGC 2025884
Query 109943 CCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGG 110002
||| | || ||||||| | | ||| | || | ||| ||||| |||
Sbjct 2025885 CCTGCGAGATGGGCGAACCCTCGTATGAAGGGTAGGTTCCAACCTCCTGGGCCATCTCAC 2025944
Query 110003 ATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAG 110062
| || ||||| || || || || || || ||||| || || || || | ||||||
Sbjct 2025945 ACGACGCCTCGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCTGGCGAG 2026004
Query 110063 ACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACAC 110122
| |||||||||| | | || || | || || |||||||| ||||
Sbjct 2026005 CGGCAGGCGAGTCGAAGGGCATGCGGAGGGCCATGAAGGCGTCGGCAAGACCCTGGACAC 2026064
Query 110123 CGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGT 110182
||||||| | ||||||||| |||||| ||| || | |||||||| |||
Sbjct 2026065 CGAGACCGACGGGGCGATGGCGCATGTTCGAGTTCTTGGCCTCCTGAACGGGGTAGTAGT 2026124
Query 110183 TGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGT 110242
|||| |||||| | | || ||||| || ||| ||| ||||| || || || || |
Sbjct 2026125 TGCGCGAGATGACGCAGTCAAGGTTCTTGGTAACAACCTTGGTGATCTCGTGAAGCTTCT 2026184
Query 110243 CGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGAT 110302
| | || | || | |||| | || | ||| || ||||| || ||||| |
Sbjct 2026185 TGAAGTCATAGGTGCTGTTCTCAAAGTCCACGAACGCGGGAAGGGCAATGGAGGCAAGGT 2026244
Query 110303 TGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAAC 110362
|||| || | | |||||| | ||| || | || || || || | ||||||
Sbjct 2026245 TGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCGATGATCTCAGTGCAGAGGTTGGACG 2026304
Query 110363 TCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCA 110422
||| || |||| || || ||| || || ||| |||| |||||||| ||||| |
Sbjct 2026305 ACTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGGTTGGCAGCATCCTTGTAGAGGA 2026364
Query 110423 TGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGG 110482
|| | ||| |||||| || ||||| | || |||||||| ||| | || | |
Sbjct 2026365 TGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGAATGGCAAACCAGA-----GCTTCTG 2026419
Query 110483 GGAC-AGTTGCGTTAGCGAGACCTT--CCTC---CTCGTACTTGGTGTACAAGTCCTCAA 110536
|| | | || | |||| |||| |||| ||||||||| ||||| | |||||
Sbjct 2026420 GGCCTTGATGGTCTTGCGA-CCCTTGCCCTCACGCTCGTACTTCTGGTACAGGGTCTCAA 2026478
Query 110537 ATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAAT 110596
| | || || || || | |||||| || | |||| || | ||||| ||| |
Sbjct 2026479 ACTTCTCCGAGTGAACGTCGGCAAGACCAGGGCACTCGGCGGGGCACATGAGGGTCCAGT 2026538
Query 110597 TTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGT 110656
|| | |||| || | ||||||||| |||||||| | ||| | || |||| || |
Sbjct 2026539 CACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGGACCCAGAGAGCGTAGAACAGAT 2026598
Query 110657 CACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATAT 110716
|||| ||| |||| || | || ||||| ||| || || | ||||| | | ||
Sbjct 2026599 CACGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAAGTCGAAAACAT 2026658
Query 110717 CCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACG------ACCCGCCT 110770
||| ||||| || || || |||| || | || || | | || || |||
Sbjct 2026659 CCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACC---AGGGCGCTTGTTGCCACCCT 2026715
Query 110771 GGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATT 110830
||| ||| || || || || || | | || | | |||||| || | || || | ||| |
Sbjct 2026716 GGTCAACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATGGGGACGATACCGTTGGAGT 2026775
Query 110831 GACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAA 110890
||| || || || ||| || ||||||||||||| ||| || || | |||||
Sbjct 2026776 AACCGTTGGTTCCAGCAATGTACGAGCCCTTGGCACGAATGTTGTGAATGTGGAGACCAA 2026835
Query 110891 TACCACCCGCCCACTTACTAATTTGTGCAC-ACTCTGTGAGTGTACCATAAATACCATCA 110949
| ||||| || ||| || || || | | ||| |||| || | || || || ||
Sbjct 2026836 TGCCACCAGCAGTCTTGGAGATCTGGGCGCAAGTCT-TGAGGGTGTCGTAGATGCCGTCG 2026894
Query 110950 ATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCC 111009
||||| || |||| | || | || ||||| || ||||||||||| | || || ||
Sbjct 2026895 ATCGAGTCGTCCTTCATAGCGACGAGGAAGCATGACGACATCTGAGGGTGGGGAGTACCA 2026954
Query 111010 GCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTG 111069
|| |||||||| || || | || ||| |||| | | |||||| |||||| ||
Sbjct 2026955 GCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGCGCTCGGACATGAGGTTGTACGTC 2027014
Query 111070 TCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATAT 111129
|| | | | | | | |||||| ||||| |||| ||| ||||| | ||| |
Sbjct 2027015 TCAATGACCTTGTCGATGTTGTCACCGTGGATACCGATGGAAACACGCATAATCATGTGC 2027074
Query 111130 TGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTG 111189
|| || ||| | ||| || |||| ||| || || ||| |||||||||
Sbjct 2027075 TGCGGACGCTCGGCCACCTTGCCGTCAATGCGCAAGAGATATGAGCGCTCGAGGGTCTTG 2027134
Query 111190 AGACCAAAGTA 111200
| ||| |||||
Sbjct 2027135 AAACCGAAGTA 2027145
>seq10
Length=825374
Score = 132 bits (146), Expect = 6e-26
Identities = 329/488 (67%), Gaps = 25/488 (5%)
Strand=Plus/Plus
Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555
||| | ||| |||||||| || || || | || || || || | |||| ||||||
Sbjct 199199 AATGTGACGGTCGAAACGGCCGGGACGCATAAGCGCCGGGTCGAGGACATCGGGACGGTT 199258
Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATTGTC---GAAACCGTCCATTTCTGTGAG 11612
||| |||| | || |||||| ||| ||| | ||| |||||||| || ||
Sbjct 199259 GGTACCGGCCAGAACGACAATGTG---CTCCTTGCCACTGAAGCCGTCCATCTCAACCAG 199315
Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATAC------CACCTGCCGA 11666
||||||||||| ||| || ||||| ||||| | || || | | ||||
Sbjct 199316 AAGCTGGTTGAGGGTCGACTCGCGCTCGTCGTTACCGC-CAAACTGTCCGCCCTTGCC-- 199372
Query 11667 ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACG 11726
|||| ||| |||| ||||||||||||||||| || | ||| || || ||| ||
Sbjct 199373 ACGCGCCTTTCCGATTGCGTCAATCTCATCGATAAAGATGATGCAGGGAGCGTTCTTCCG 199432
Query 11727 TGCCTGTTCGAAA-AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGA 11785
|| || ||| || ||||| |||||| | || ||||| |||||||| || || |
Sbjct 199433 CGCA-GTGGAAAACAGGTCACGGACACGCGAGGGACCGACACCGACGAACATTTCGACAA 199491
Query 11786 AGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCG 11844
| | | | ||| || || | ||| || || || | |||||| || | || ||
Sbjct 199492 ACTCCGATCCGGAA-ACCGACAGGAACGGCACCTTGGCCTCACCGGCAGTCGCCTTTGCA 199550
Query 11845 AGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCA 11904
|| |||||||| || ||||| |||| || | ||||| ||| || ||||| |||||||||
Sbjct 199551 AGCAGAGTCTTTCCGGTACCGGGTGGGCCGGAGAGAATGGCACCGCGGGGAATCTTGGCA 199610
Query 11905 CC--ACTTC-CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCC 11961
|| |||| | | | | | |||| ||||||||| | |||| |||| || |||
Sbjct 199611 CCGAGCTTCTCGTACTTGGAC---GGCTCCTTGAGGAACTTGACAAACTCCATAATCTCC 199667
Query 11962 TCCTTGGC 11969
||||||||
Sbjct 199668 TCCTTGGC 199675
>seq3
Length=3725192
Score = 109 bits (120), Expect = 6e-19
Identities = 102/130 (78%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567
||||| || ||||| ||||||||||||||||| ||| ||| ||| ||||||| ||
Sbjct 3008258 TGAAGACCCTCATCTCGAGAGATGAGCTCATTCGAGAATGTAAGGCCACGCATGAGACCG 3008199
Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627
| || || ||||| ||||||||| ||| ||| || ||||||||||||||||||||
Sbjct 3008198 CGCTTTTTGAGCCAGAAGATGGCAGCAAATGATCCCGAGAAGAAGATGCCCTCCACACAT 3008139
Query 119628 GCGAAAGCGA 119637
|| || ||||
Sbjct 3008138 GCAAAGGCGA 3008129
>seq11
Length=562504
Score = 98.7 bits (108), Expect = 1e-15
Identities = 170/244 (70%), Gaps = 5/244 (2%)
Strand=Plus/Minus
Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554
|||||| || ||||| || || || || ||||||||||| || ||| || ||
Sbjct 36989 GGCAAAGTCGGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGGCC 36930
Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614
|||||||| || | ||||| ||||| ||||| | ||| ||||| || |||||
Sbjct 36929 GGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAAGAT 36870
Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTCG---A 119670
|| || || |||||| || | || |||||||| ||||| |||| || |||| |
Sbjct 36869 ACCTTCGACGGCGGCGAACGCAATGAGGCGCTCAGC-AAAGGACGAGCGCTCGTCGGAAA 36811
Query 119671 ACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGA 119730
||| ||| ||||||| |||||| || |||||||||| || | |||||| | ||
Sbjct 36810 TCCAACGGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCCTTGA 36751
Query 119731 AAAG 119734
| ||
Sbjct 36750 AGAG 36747
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975793858400
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