Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 219 5e-52 seq3 107 2e-18 >seq1 Length=4014173 Score = 219 bits (242), Expect = 5e-52 Identities = 676/1036 (65%), Gaps = 21/1036 (2%) Strand=Plus/Plus Query 106280 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 106339 || || ||||| || ||||| | ||| | || | || ||||| || || || || Sbjct 2026046 TCGGCAAGACCCTGGACACCGAGACCGACGGGGCGATGGCGCATGTTCGAGTTCTTGGCC 2026105 Query 106340 GTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 106399 || |||||| || | || | ||||| | || || || |||||||||| ||| Sbjct 2026106 TCCTGAACGGGGTAGTAGTTGCGCGAGATGACGCAGTCAAGGTTCTTGGTAACAACCTTG 2026165 Query 106400 GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA 106459 ||||| || ||||| || | | ||| | |||| |||| | || || ||| Sbjct 2026166 GTGATCTCGTGAAGCTTCTTGAAGTCATAGGTGCTGTTCTCAAAGTCCACGAACGCGGGA 2026225 Query 106460 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 106519 ||||| || || || | ||||| || || ||| || | | |||||| | || Sbjct 2026226 AGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCGATGATC 2026285 Query 106520 TCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTG 106579 || || || | |||||| ||| || || |||| | || |||||| ||| |||| Sbjct 2026286 TCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGGTTG 2026345 Query 106580 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCC 106639 |||||||||||||| ||| |||| || ||||| ||||| | || ||||| || Sbjct 2026346 GCAGCATCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGAATGGCA 2026405 Query 106640 TTCCACA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGT-CCCTCCGCCTCGTACTT 106695 ||| | | || | | || | |||| ||| ||| | ||||| ||||||||| Sbjct 2026406 AACCAGAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTGCCCTCACGCTCGTACTT 2026461 Query 106696 TGTGTAGAGGGCTTCAAACTCCTCACCCACCG--CGTCGGAGAGACCTGGTGCCTTGTCT 106753 ||| |||| ||||||| ||| | | | |||||| ||||| || || | | Sbjct 2026462 CTGGTACAGGGTCTCAAACTTCTC--CGAGTGAACGTCGGCAAGACCAGGGCACTCGGCG 2026519 Query 106754 GGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 106813 || || | || | ||| | ||| | |||| || ||||||||||| ||||| || | | Sbjct 2026520 GGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGGACC 2026579 Query 106814 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 106873 || || | | || ||||| | ||| |||| || | || ||||| || | Sbjct 2026580 CAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGG 2026639 Query 106874 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC---- 106929 |||||||| || | | |||||| ||||| |||||||| |||| || | | || Sbjct 2026640 TCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGG 2026699 Query 106930 CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 106989 | | | | ||| | || | || || || || || |||| | | || ||||| || Sbjct 2026700 CGCTTGTTG-CCACCCTGGTCAACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATGGG 2026758 Query 106990 AATAATACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTCACA 107047 | ||||| | || | ||| || || || || |||||| ||||| | | Sbjct 2026759 GACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAG--CCCTTGGCACGAATG 2026816 Query 107048 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 107107 | || ||||| | ||||| || ||||| ||| ||||| || || || | | || Sbjct 2026817 TTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAAGTCTTGAGG 2026876 Query 107108 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 107167 || | ||||| |||| ||| ||||| ||||| | |||| |||||||| |||||| Sbjct 2026877 GTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCATGACGACATC 2026936 Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || || |||||||| ||||||||||| || | |||||| |||| | | | Sbjct 2026937 TGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGCGCTCG 2026996 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 ||||| || ||| ||||| | ||| || |||| || |||||||| ||||||| Sbjct 2026997 GACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCGTGGATACCGATGGAA 2027056 Query 107288 ACACGCATAAACATGT 107303 |||||||||| ||||| Sbjct 2027057 ACACGCATAATCATGT 2027072 >seq3 Length=3725192 Score = 107 bits (118), Expect = 2e-18 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| |||||||||||||| || || || ||||| ||||| ||||| Sbjct 3008270 GCAAAGTCGGTGTGAAGACCCTCATCTCGAGAGATGAGCTCATTCGAGAATGTAAGGCCA 3008211 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 117392 |||||||||| ||||| || | ||| | || || ||| ||||| || ||||||||||| Sbjct 3008210 CGCATGAGACCGCGCTTTTTGAGCCAGAAGATGGCAGCA-AATGATCCCGAGAAGAAGAT 3008152 Query 117393 ACCCTCCACACACGCAAACGC 117413 ||||||||||| ||||| || Sbjct 3008151 GCCCTCCACACATGCAAAGGC 3008131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980593506720