Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq11 140 7e-28
seq2 122 2e-22
seq1 98.7 2e-15
>seq11
Length=562504
Score = 140 bits (154), Expect = 7e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||||||||| | || ||||| || ||||| ||||| |||| |||||| | || || ||
Sbjct 29490 AACAAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTC 29431
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
||||||||| || |||||||| || || || ||||| || |||||||| || ||||| ||
Sbjct 29430 GAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 29371
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||| ||||| || || ||||| || || |||||||| || | |||||
Sbjct 29370 AATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCAACTTCAAGAGTGATAGTCTT 29311
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 29310 GCCAGTGAGGGTCTTGACGAAAATCTGCAT 29281
Score = 132 bits (146), Expect = 1e-25
Identities = 148/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| || ||||| || ||||| || || || |||||||| | || || | || || ||
Sbjct 28525 AACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTACGACCGTCCTC 28466
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
||||||||| || || ||||| || || || ||||| || || ||||| || ||||| ||
Sbjct 28465 GAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 28406
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||||||||| || |||||||||||| || || |||||||| | |||||
Sbjct 28405 AATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTT 28346
Query 195111 TCCTGTCAAAGTTTTTAC 195128
|| || | ||| || ||
Sbjct 28345 GCCCGTAAGAGTCTTGAC 28328
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| ||||| || ||||| || || || ||||| || | || || | || || |||
Sbjct 29033 ACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCGTCCTCG 28974
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || || || ||||| || || || || || ||||| ||
Sbjct 28973 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGG 28914
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| || || || ||||||||||| ||| ||||| ||||||| |||||
Sbjct 28913 ATCTTGGCCTTCACATTGTCGATGGTGTCCGACGATTCGACTTCGAGGGTAATGGTCTTG 28854
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | ||| || ||||| | |||||
Sbjct 28853 CCAGTGAGAGTCTTGACGAAGATCTGCAT 28825
Score = 122 bits (134), Expect = 2e-22
Identities = 138/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| ||||| || ||||| || || || ||||| || | ||| || | || || |||
Sbjct 28805 ACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCGTCCTCG 28746
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || || || ||||| || || ||||| || ||||| ||
Sbjct 28745 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 28686
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| || |||||||||||| || || ||||| || | ||| ||
Sbjct 28685 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCAACCTCAAGAGTGATCGTTTTG 28626
Query 195112 CCTGT 195116
|| ||
Sbjct 28625 CCGGT 28621
>seq2
Length=3730214
Score = 122 bits (134), Expect = 2e-22
Identities = 138/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || ||||| || || || ||||| || | ||| || | ||||| |||
Sbjct 3658295 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCG 3658354
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || ||||| || || ||||| || ||||| ||
Sbjct 3658355 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 3658414
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| || |||||||| || ||||| || ||||| | |||||
Sbjct 3658415 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTG 3658474
Query 195112 CCTGT 195116
|| ||
Sbjct 3658475 CCCGT 3658479
>seq1
Length=4014173
Score = 98.7 bits (108), Expect = 2e-15
Identities = 114/154 (74%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022
|||| || | ||| || | || || ||||||||||| || ||||||||||| || || |
Sbjct 637235 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCT 637176
Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082
|||| || || ||||| || ||||| || || || ||||||||| || || |||||||
Sbjct 637175 GGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCCG 637116
Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
| || || || ||||| | ||||| || ||
Sbjct 637115 ACGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 637082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109481201973476
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |