Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq11 114 8e-21 seq2 89.7 3e-13 >seq11 Length=562504 Score = 114 bits (126), Expect = 8e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| |||| || || || ||||| |||||||| ||| | || | || || Sbjct 29262 AACGAGGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTACGACCGTCTTC 29203 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || |||||||| || || || |||||||| | || | ||||||||||| Sbjct 29202 AAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTG 29143 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||||| || ||| | || | || | ||| || |||| ||| ||||| || Sbjct 29142 AATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCGACCTCGAGGGTAATGGTCTT 29083 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||||||||| || |||||||||||| Sbjct 29082 GCCTGTGAGAGTCTTGACGAAGATCTGCATA 29052 Score = 95.1 bits (104), Expect = 8e-15 Identities = 132/183 (72%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || ||||| ||| | || | || || ||||| ||||||||||| Sbjct 28506 TCCTTCTGGATGTTGTAATCCGAGAGGGTACGACCGTCCTCGAGCTGCTTTCCGGCAAAG 28447 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||| ||||| Sbjct 28446 ATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGAC---- 28391 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | | ||||| | ||| | ||| || || | ||| ||||| || ||||| |||||||| Sbjct 28390 GTTGTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGAGTCTT 28331 Query 34967 CAC 34969 || Sbjct 28330 GAC 28328 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| ||||| | || | || || ||||| || || || || Sbjct 29471 TCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 29412 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||||| || ||| Sbjct 29411 ATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTG 29352 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | |||||| || | || || || || || ||||| ||||| || Sbjct 29351 TCGATAGTGTCGGACGACTCAACTTCAAGAGTGATAGTCTTGCCAGTGAGGGTCTTGACG 29292 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 29291 AAAATCTGCATA 29280 Score = 82.4 bits (90), Expect = 5e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||||||| | || | || || ||||| || |||||||| Sbjct 28787 TCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAG 28728 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || || || |||||||| |||| | ||||||||||| Sbjct 28727 ATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 28690 >seq2 Length=3730214 Score = 89.7 bits (98), Expect = 3e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||||||| | || |||| || ||||| || ||||| || Sbjct 3658313 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAG 3658372 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| |||||| Sbjct 3658373 ATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 3658432 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | ||| || |||| ||| || || || |||||||| ||||| || Sbjct 3658433 TCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 3658491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633489218784