Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq11 91.5 1e-13 >seq11 Length=562504 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| ||||| || ||||| || || || | ||| |||| || | |||| Sbjct 29255 TGAAGTGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTACGACCGTCTTCAAGCTGC 29196 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || |||||||| || || ||||| || || | |||| ||||||||||| |||||| Sbjct 29195 TTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTC 29136 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | || || |||| ||| ||||| | ||||| || || || || Sbjct 29135 GCCTTCACGTTGTCGATAGTGTCGGACGACTCGACCTCGAGGGTAATGGTCTTGCCTGTG 29076 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | ||| || || || |||||||| Sbjct 29075 AGAGTCTTGACGAAGATCTGCAT 29053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937470005044