Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 280 3e-70 seq11 224 2e-53 seq3 98.7 2e-15 >seq1 Length=4014173 Score = 280 bits (310), Expect = 3e-70 Identities = 947/1460 (65%), Gaps = 55/1460 (4%) Strand=Plus/Plus Query 212687 CAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTC 212746 ||| || | ||| || ||||| |||||| || || | | | ||| ||||| | ||| Sbjct 2025439 CAGGTGGATGTTGAGCGACTGCGACTGGTCGATAAAAGCACCACGGTCGGCGGCAAGGTC 2025498 Query 212747 TATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGG 212806 || | | |||| || | |||||| || |||||| |||| |||| || || || Sbjct 2025499 GATAACTGCCTTCTGCGAAATCTCCCAGACAGTCTTGTAGATCGACTTGATCTCATCGGG 2025558 Query 212807 GAAGCCGGGGATGTTCTGCACAGACCC-CCTGTGT--ATGGTCAGCTGCAGGCGCATGTC 212863 | || || |||| ||| | || || || | | ||| |||||| ||||| Sbjct 2025559 AATTCCAGGAATGTGCTGGATCGAACCACCCGAGGCGATGACGAGCTGCTT---CATGTT 2025615 Query 212864 CTCGTTCCAGAGGCCCCTGGTCTCCAGG-CACTT--GA-CCAGGTGAGGGTTGACTATCT 212919 |||| ||||||| | | | ||| ||| || ||||| || ||| | || Sbjct 2025616 GTCGTCCCAGAGGTCGAGGTTGATGAGGTCACGAAGGAGCCAGG----GGCAGACGACCT 2025671 Query 212920 GGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCT 212979 |||||||||| |||||||| | | ||| | | || ||||| ||||||| || || Sbjct 2025672 GGAAGTCACCAGAGAGCACACGGCGGGAGTAGAGCATCGAGGTGTAAGGCTCGAAGCACT 2025731 Query 212980 CGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGT 213039 |||| || |||||||| | |||| || || |||||||| || || || || || Sbjct 2025732 CGTTCCAGCCAAGAATCTGAGAAGTGGAAGCAGTAGGCATGGGGGCGACGAGAAGCGAGT 2025791 Query 213040 TCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACA 213099 | | || |||| || | |||| || ||||| |||||| ||| | | | Sbjct 2025792 TGCGAACGCCGTTCTTGGCGATCTTCTCACGGAGCTCGTCCCAGTTCCAGAGGTCGGTGG 2025851 Query 213100 GGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGC 213159 || || || ||| | ||||||||| | |||| | | ||| | Sbjct 2025852 GGATA-CGGCC--------CCAAAGGTCAAACTGGAGCTTGCCCTGCGAGATGGGCGAAC 2025902 Query 213160 CCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAG 213219 ||| ||| || | ||||| ||| ||||| ||||| ||| || ||||||| || |||| Sbjct 2025903 CCTCGTATGAAGGGTAGGTTCCAACCTCCTGGGCCATCTCACACGACGCCTCGAGAGCAG 2025962 Query 213220 CGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGG 213279 ||| ||||||||| || || |||| |||||||| || | || || ||||| Sbjct 2025963 CGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCTGGCGAGCGGCAGGCGAGTCGAAGG 2026022 Query 213280 GCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGT 213339 |||| | | ||| | || || || |||||||| |||| |||| ||| | | Sbjct 2026023 GCATGCGGAGGGCCATGAAGGCGTCGGCAAGACCCTGGACACCGAGACCGACGGGGCGAT 2026082 Query 213340 GTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGT 213399 | | || ||| || || | ||||| | |||||| |||||| ||||| || Sbjct 2026083 GGCGCATGTTCGAGTTCTTGGCCTCCTGAACGGGGTAGTAGTTGCGCGAGATGACGCAGT 2026142 Query 213400 TGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGC 213459 ||||| ||| | || ||||||| | | || | || |||| | ||| Sbjct 2026143 CAAGGTTCTTGGTAACAACCTTGGTGATCTCGTGAAGCTTCT------TGAAGTCATAGG 2026196 Query 213460 CCCCGTCCTG------CACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCA 213513 | || || ||| ||| | || ||||| ||| ||| |||||||| ||||| | Sbjct 2026197 TGCTGTTCTCAAAGTCCACGAACGCGGGAAGGGCAATGGAGGCAAGGTTGCAGACGGCAA 2026256 Query 213514 CCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTG 213572 |||| | | ||| | |||||| |||||||| ||||| |||||| | ||| ||| Sbjct 2026257 CCTCGTCGGGAGAA-GAGTACTCGATGATCTCAGTGCAGAGGTTGGACGACTTGATAGTG 2026315 Query 213573 CCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGAC 213632 ||||||| ||| ||||| ||||| |||||||| |||||||||||| ||| ||||| Sbjct 2026316 CCCAGGTGCTGCTGGTTAGACTTGCGGTTGGCAGCATCCTTGTAGAGGATGAAGGGGCCA 2026375 Query 213633 CCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGTACCTGGCCTTGACCACCC 213690 || ||||| ||||| | | || || ||| |||||| | | |||||||| Sbjct 2026376 CCAGTCTCGGTCTGGGCCTCAAGAAT--GGCAAACCAGAGCTTCTGGGCCTTGATG---- 2026429 Query 213691 GCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCC 213749 | || | | | | | | | |||||||| | ||| || | || | | || Sbjct 2026430 GTCTTGCGACCCTTGCCCTCACGCTCGTACTTCTGGTACAGGGTCTCAAACTTCT---CC 2026486 Query 213750 CAG---ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCA 213806 || || | | || || || || ||||| ||||||||| ||||||| ||||| Sbjct 2026487 GAGTGAACGTCGGCAAGACCAGGGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCG 2026546 Query 213807 TCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTC 213866 | ||| | || |||||| ||||| |||||||| || ||| |||||| || | | Sbjct 2026547 GCCTCGACACGCTTCATGAAGAGGTCAGGGACCCAGAGAGCGTAGAACAGATCACGCGCG 2026606 Query 213867 CTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGC 213926 | ||| ||| || ||| ||||| || || || ||||| || | ||||| ||| Sbjct 2026607 CGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAAGTCGAAAACATCCGCATGC 2026666 Query 213927 CACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGC 213983 || ||||| | ||||||||||||||| || | || | ||||| |||||||| || Sbjct 2026667 CAGGGCTCAAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCAACGTAA 2026726 Query 213984 CTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTT 214043 | ||| | || | || || || | ||| || | |||||||| | ||||||||| Sbjct 2026727 CGGGCGGTCGCGTCGTAGGCACGGAGCATGGGGACGATACCGTTGGAGTAACCGTTGGTT 2026786 Query 214044 CCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCG 214103 || || || |||||||| ||| | | |||| ||| ||| || |||||||| || Sbjct 2026787 CCAGCAATGTACGAGCCCTTGGCACGAATGTTGTGAATGTGGAGACCAATGCCACCAGCA 2026846 Query 214104 TACTTGGAGATCATGGCGCA 214123 |||||||||| |||||| Sbjct 2026847 GTCTTGGAGATCTGGGCGCA 2026866 >seq11 Length=562504 Score = 224 bits (248), Expect = 2e-53 Identities = 362/517 (70%), Gaps = 5/517 (1%) Strand=Plus/Minus Query 47860 CTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTGGG 47919 ||| |||||||| | ||| || | || ||||| ||||||| ||| ||||||||| | Sbjct 37259 CTCGAAGAAGTTGGCCTTGCCTTGCAGAGAGATCATCTCCATAAAGTCGAAGGGGTTCGT 37200 Query 47920 TGTGTTATACACCCGTGTCAGGCCCATCTGTTCC-AGCAGGTGATCCGCGACGTACTCGA 47978 | ||| || | | |||| ||| | | |||||| | || |||||| |||| | Sbjct 37199 CGAGTTGTAGATCT-TGTCGTTGCCAAGGGCGACGAGCAGGCGGTCGGCGACGAACTCAA 37141 Query 47979 TGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGA 48038 |||||| ||||||| |||||| || ||||| |||||||| | |||| || | Sbjct 37140 TGTATTGGCACATGAGACCAGCGTTCATACCGATGAGCGACACGGGGAGCGCCTCGGTAA 37081 Query 48039 GAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGG 48098 | ||||||| || |||| ||||| || | | ||||| || || | || | | | Sbjct 37080 GGAACTCCTGTTCAATCTTGACGGCCTCGCGGATAATCTTCTCAATGAGG---TTGGGGT 37024 Query 48099 GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGT 48158 | | || || | | || | |||| ||||||||||| |||| | || |||| Sbjct 37023 GCGGGCGACGGCGGAGATGGGTGAAAAGCAGACAGGCAAAGTCGGTGTGAAGACCCTCGT 36964 Query 48159 CCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCC 48218 | || ||||||| |||||||||| ||| || ||||||| || | || ||||||| Sbjct 36963 CACGCGAGATGAGCTCGTTGGAGAAAGTGAGGCCGGGCATGAGGCCACGCTTCTTGAGCC 36904 Query 48219 AGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGA 48278 |||| || | || || ||||||||||| ||||| || || || || |||||||| ||| Sbjct 36903 AGAAGATCGAGGCAAACGAGCCAGAGAAAAAGATACCTTCGACGGCGGCGAACGCAATGA 36844 Query 48279 GCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCT 48338 | | ||| | || || | | || ||| || ||||| ||||||||||| ||||||| Sbjct 36843 GGCGCTCAGCAAAGGACGAGCGCTCGTCGGAAATCCAACGGAGCGCCCAGTCGGCCTTCT 36784 Query 48339 TCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 |||||||||| || || ||||| |||||| |||||| Sbjct 36783 TCTTGATGCAGGGGATGGTCTCGATGGCCTTGAAGAG 36747 >seq3 Length=3725192 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 48120 CATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGG 48179 ||||||| | ||| |||||||| |||| | || || || || ||||||| | || | Sbjct 3008284 CATAGAGGAGGCACGCAAAGTCGGTGTGAAGACCCTCATCTCGAGAGATGAGCTCATTCG 3008225 Query 48180 AGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGC 48239 |||| || ||| |||||| || | || |||||||||||| || || || || || | Sbjct 3008224 AGAATGTAAGGCCACGCATGAGACCGCGCTTTTTGAGCCAGAAGATGGCAGCAAATGATC 3008165 Query 48240 CAGAGAAGAAGATGCCCTCCAC 48261 | |||||||||||||||||||| Sbjct 3008164 CCGAGAAGAAGATGCCCTCCAC 3008143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532473963520