Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1 280 3e-70 seq11 132 9e-26 seq3 100 5e-16 >seq1 Length=4014173 Score = 280 bits (310), Expect = 3e-70 Identities = 575/850 (68%), Gaps = 25/850 (3%) Strand=Plus/Plus Query 221687 TCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTG 221746 ||||| || ||| ||||||| | ||| ||||| || ||||| |||||||| Sbjct 2026211 TCCACGAACGCGGGAAGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAA 2026270 Query 221747 GTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGA 221806 | |||| |||||||| || ||||||||| ||||||| || |||||||| | || Sbjct 2026271 GAGTACTCGATGATCTCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGG 2026330 Query 221807 TTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGA 221866 ||||||||||| |||||||| ||||||||||| || ||||| || |||||||| ||| Sbjct 2026331 TTAGACTTGCGGTTGGCAGCATCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGG 2026390 Query 221867 GCCACCAGAATCTTGTCCCAGAG-TTCTCTGGCGCTCACCGTC------CTCTTGACTGC 221919 ||| | ||||| |||||| |||| ||| | | ||| | |||| | | Sbjct 2026391 GCCTCAAGAATGGCAAACCAGAGCTTCT-GGGCCTTGATGGTCTTGCGACCCTTGCCCTC 2026449 Query 221920 ACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTC 221979 || |||| ||| | |||| || | | |||||||| || || | ||| | Sbjct 2026450 ACGCTCGTACTT-------CTGGTACAGGG--TCTCAAACTTCTCCGAGTGAACGTCGGC 2026500 Query 221980 CAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTG 222039 || || || ||| |||||| ||||| || |||||| || | | | ||| | || Sbjct 2026501 AAGACCAGGGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTT 2026560 Query 222040 CATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCAC 222099 |||||||||||| |||| ||| || || | || ||||| | | || ||||||| Sbjct 2026561 CATGAAGAGGTCAGGGACCCAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTT 2026620 Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 ||||| ||| || | || || | || || |||| || || ||||| ||||| || || Sbjct 2026621 GCCGTGGTTCTTGCGGAGGTCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTA 2026680 Query 222160 GACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTT 222219 || ||| | || || || ||||||||||||||||| || || | | |||| Sbjct 2026681 GATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCGCGTC 2026740 Query 222220 GAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGC 222279 | || || || | || || | |||||||| ||||||||| || |||||||| Sbjct 2026741 GTAGGCACGGAGCATGGGGACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGA 2026800 Query 222280 ACCGCCGGCCCTCAGGTT---ACTG-GCAGACATGCCGATACCACCGGCGTGTTTCGAGA 222335 || ||| | | ||| | || | ||| || || ||||| || || |||| Sbjct 2026801 GCCCTTGGCACGAATGTTGTGAATGTGGAGA----CCAATGCCACCAGCAGTCTTGGAGA 2026856 Query 222336 TCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCA 222395 || |||||| ||||||| ||||| |||||| || || ||||| ||||| | | Sbjct 2026857 TCTGGGCGCAAGTCTTGAGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGA 2026916 Query 222396 GCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGG 222455 || || || ||||||||||||| | || | || ||||| || || || || | Sbjct 2026917 CGAGGAAGCATGACGACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAG 2026976 Query 222456 CGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGT 222515 |||| || ||||||| | ||||| || | ||||||||| | ||| || ||||||||| Sbjct 2026977 CGTGAGTGAAGTAGCGCTCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGT 2027036 Query 222516 CCCCGTGAAT 222525 | ||||| || Sbjct 2027037 CACCGTGGAT 2027046 >seq11 Length=562504 Score = 132 bits (146), Expect = 9e-26 Identities = 336/512 (66%), Gaps = 15/512 (3%) Strand=Plus/Plus Query 25795 GCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAAC 25854 ||||||||| ||| ||| ||||||||| |||||| ||||| | ||||| | Sbjct 36756 GCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCCGTTGGATTTCC 36815 Query 25855 AGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTT 25914 | || || | | |||| ||||| || | || || || || || || || |||||| Sbjct 36816 GACGAGCGCTCGTCCTTTGCTGAGCGCCTCATTGCGTTCGCCGCCGTCGAAGGTATCTTT 36875 Query 25915 TTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTG 25974 ||| || |||||||| | ||||||||||||||| || || ||||||||| || Sbjct 36876 TTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCT- 36934 Query 25975 TACTTT-TCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 ||||| ||||||||||||||| | ||||||||||| |||| || |||||||| || Sbjct 36935 CACTTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTTCACACCGACTTTGCCTGTCT 36994 Query 26034 GCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTC---TACAGTATCAT 26090 ||| | ||| ||| |||| | | | || | | || | | || || Sbjct 36995 GCTTTTCAC---CCA---TCTCCGCCGTCGCCCGCACCCCAACCTCATTGAGAAGATTAT 37048 Query 26091 CAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNT 26150 | ||||| || |||| || ||||||| | | Sbjct 37049 CCGCGAGGCCGTCAAGATTGAACAGGAGTTCCTTACCGAGGCGCTCCCCGTGTCGCTCAT 37108 Query 26151 GGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GT 26209 || |||||| | |||||| ||||||||||||||| || ||||||| ||||| || Sbjct 37109 CGGTATGAACGCTGGTCTCATGTGCCAATACATTGAGTTCGTCGCCGACCGCCTGCTCGT 37168 Query 26210 -GCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAAC 26268 ||| || || || || |||||| || | ||||| |||||||||||||| | Sbjct 37169 CGCC--CTTGGCAACGACAAGATCTACAACTCGACGAACCCCTTCGACTTTATGGAGATG 37226 Query 26269 ATATCGTTGGAAGGGAAGACCAACTTCTTTGA 26300 || || || |||| ||| |||||||||| || Sbjct 37227 ATCTCTCTGCAAGGCAAGGCCAACTTCTTCGA 37258 >seq3 Length=3725192 Score = 100 bits (110), Expect = 5e-16 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 25882 CTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTC 25941 ||| | |||||||| ||||||||||||||| ||| || || ||||| ||||||||| Sbjct 3008125 CTGATCGCCTTTGCATGTGTGGAGGGCATCTTCTTCTCGGGATCATTTGCTGCCATCTTC 3008184 Query 25942 TGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAG 26000 |||||||| || || ||||| || || ||| || || || ||||||||| | Sbjct 3008185 TGGCTCAAAAAGCGCGGTCTCATGCGTGGCCT-TACATTCTCGAATGAGCTCATCTCTCG 3008243 Query 26001 GGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTA 26039 || |||||||| |||| || ||||| ||||| ||||| Sbjct 3008244 AGATGAGGGTCTTCACACCGACTTTGCGTGCCTCCTCTA 3008282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844474904320