Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq1 280 3e-70
seq11 132 9e-26
seq3 100 5e-16
>seq1
Length=4014173
Score = 280 bits (310), Expect = 3e-70
Identities = 575/850 (68%), Gaps = 25/850 (3%)
Strand=Plus/Plus
Query 221687 TCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTG 221746
||||| || ||| ||||||| | ||| ||||| || ||||| ||||||||
Sbjct 2026211 TCCACGAACGCGGGAAGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAA 2026270
Query 221747 GTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGA 221806
| |||| |||||||| || ||||||||| ||||||| || |||||||| | ||
Sbjct 2026271 GAGTACTCGATGATCTCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGG 2026330
Query 221807 TTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGA 221866
||||||||||| |||||||| ||||||||||| || ||||| || |||||||| |||
Sbjct 2026331 TTAGACTTGCGGTTGGCAGCATCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGG 2026390
Query 221867 GCCACCAGAATCTTGTCCCAGAG-TTCTCTGGCGCTCACCGTC------CTCTTGACTGC 221919
||| | ||||| |||||| |||| ||| | | ||| | |||| | |
Sbjct 2026391 GCCTCAAGAATGGCAAACCAGAGCTTCT-GGGCCTTGATGGTCTTGCGACCCTTGCCCTC 2026449
Query 221920 ACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTC 221979
|| |||| ||| | |||| || | | |||||||| || || | ||| |
Sbjct 2026450 ACGCTCGTACTT-------CTGGTACAGGG--TCTCAAACTTCTCCGAGTGAACGTCGGC 2026500
Query 221980 CAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTG 222039
|| || || ||| |||||| ||||| || |||||| || | | | ||| | ||
Sbjct 2026501 AAGACCAGGGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTT 2026560
Query 222040 CATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCAC 222099
|||||||||||| |||| ||| || || | || ||||| | | || |||||||
Sbjct 2026561 CATGAAGAGGTCAGGGACCCAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTT 2026620
Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159
||||| ||| || | || || | || || |||| || || ||||| ||||| || ||
Sbjct 2026621 GCCGTGGTTCTTGCGGAGGTCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTA 2026680
Query 222160 GACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTT 222219
|| ||| | || || || ||||||||||||||||| || || | | ||||
Sbjct 2026681 GATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCGCGTC 2026740
Query 222220 GAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGC 222279
| || || || | || || | |||||||| ||||||||| || ||||||||
Sbjct 2026741 GTAGGCACGGAGCATGGGGACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGA 2026800
Query 222280 ACCGCCGGCCCTCAGGTT---ACTG-GCAGACATGCCGATACCACCGGCGTGTTTCGAGA 222335
|| ||| | | ||| | || | ||| || || ||||| || || ||||
Sbjct 2026801 GCCCTTGGCACGAATGTTGTGAATGTGGAGA----CCAATGCCACCAGCAGTCTTGGAGA 2026856
Query 222336 TCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCA 222395
|| |||||| ||||||| ||||| |||||| || || ||||| ||||| | |
Sbjct 2026857 TCTGGGCGCAAGTCTTGAGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGA 2026916
Query 222396 GCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGG 222455
|| || || ||||||||||||| | || | || ||||| || || || || |
Sbjct 2026917 CGAGGAAGCATGACGACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAG 2026976
Query 222456 CGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGT 222515
|||| || ||||||| | ||||| || | ||||||||| | ||| || |||||||||
Sbjct 2026977 CGTGAGTGAAGTAGCGCTCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGT 2027036
Query 222516 CCCCGTGAAT 222525
| ||||| ||
Sbjct 2027037 CACCGTGGAT 2027046
>seq11
Length=562504
Score = 132 bits (146), Expect = 9e-26
Identities = 336/512 (66%), Gaps = 15/512 (3%)
Strand=Plus/Plus
Query 25795 GCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAAC 25854
||||||||| ||| ||| ||||||||| |||||| ||||| | ||||| |
Sbjct 36756 GCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCCGTTGGATTTCC 36815
Query 25855 AGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTT 25914
| || || | | |||| ||||| || | || || || || || || || ||||||
Sbjct 36816 GACGAGCGCTCGTCCTTTGCTGAGCGCCTCATTGCGTTCGCCGCCGTCGAAGGTATCTTT 36875
Query 25915 TTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTG 25974
||| || |||||||| | ||||||||||||||| || || ||||||||| ||
Sbjct 36876 TTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCT- 36934
Query 25975 TACTTT-TCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033
||||| ||||||||||||||| | ||||||||||| |||| || |||||||| ||
Sbjct 36935 CACTTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTTCACACCGACTTTGCCTGTCT 36994
Query 26034 GCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTC---TACAGTATCAT 26090
||| | ||| ||| |||| | | | || | | || | | || ||
Sbjct 36995 GCTTTTCAC---CCA---TCTCCGCCGTCGCCCGCACCCCAACCTCATTGAGAAGATTAT 37048
Query 26091 CAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNT 26150
| ||||| || |||| || ||||||| | |
Sbjct 37049 CCGCGAGGCCGTCAAGATTGAACAGGAGTTCCTTACCGAGGCGCTCCCCGTGTCGCTCAT 37108
Query 26151 GGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GT 26209
|| |||||| | |||||| ||||||||||||||| || ||||||| ||||| ||
Sbjct 37109 CGGTATGAACGCTGGTCTCATGTGCCAATACATTGAGTTCGTCGCCGACCGCCTGCTCGT 37168
Query 26210 -GCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAAC 26268
||| || || || || |||||| || | ||||| |||||||||||||| |
Sbjct 37169 CGCC--CTTGGCAACGACAAGATCTACAACTCGACGAACCCCTTCGACTTTATGGAGATG 37226
Query 26269 ATATCGTTGGAAGGGAAGACCAACTTCTTTGA 26300
|| || || |||| ||| |||||||||| ||
Sbjct 37227 ATCTCTCTGCAAGGCAAGGCCAACTTCTTCGA 37258
>seq3
Length=3725192
Score = 100 bits (110), Expect = 5e-16
Identities = 119/159 (75%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 25882 CTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTC 25941
||| | |||||||| ||||||||||||||| ||| || || ||||| |||||||||
Sbjct 3008125 CTGATCGCCTTTGCATGTGTGGAGGGCATCTTCTTCTCGGGATCATTTGCTGCCATCTTC 3008184
Query 25942 TGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAG 26000
|||||||| || || ||||| || || ||| || || || ||||||||| |
Sbjct 3008185 TGGCTCAAAAAGCGCGGTCTCATGCGTGGCCT-TACATTCTCGAATGAGCTCATCTCTCG 3008243
Query 26001 GGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTA 26039
|| |||||||| |||| || ||||| ||||| |||||
Sbjct 3008244 AGATGAGGGTCTTCACACCGACTTTGCGTGCCTCCTCTA 3008282
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928844474904320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |