Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 179 4e-40 seq3 107 2e-18 >seq1 Length=4014173 Score = 179 bits (198), Expect = 4e-40 Identities = 674/1046 (64%), Gaps = 27/1046 (3%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| | ||||| || | ||||| |||||||| || |||| || ||| Sbjct 2027079 CCGCAGCACATGATTATGCGTGTTTCCATCGGTATCCACGGTGACAACATCGACAAGGTC 2027020 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | ||||| ||| || |||||| | | |||| |||||| | || ||||||||| Sbjct 2027019 ATTGAGACGTACAACCTCATGTCCGAGCGCTACTTCACTCACGCTTCCCCGACCCTCTTC 2026960 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || |||||||| || || |||||||| |||||||| |||| | ||||| ||| Sbjct 2026959 AACGCTGGTACTCCCCACCCTCAGATGTCGTCATGCTTCCTCGTCGCTATGAAGGACGAC 2026900 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 || ||| |||| ||||| | || || | | || || || ||||| ||| ||||| Sbjct 2026899 TCGATCGACGGCATCTACGACACCCTCAAGACTTGCGCCCAGATCTCCAAGACTGCTGGT 2026840 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCGGGGGACAA 75509 || ||||| | ||||| || | | | |||| | ||||| ||| || || | Sbjct 2026839 GGCATTGGTCTCCACATTCACAACATTCGTGCCA--AGGGCTCGTACATTGCTGGAACCA 2026782 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | ||| | || | ||||| | || ||||| || | | |||| || || || || | Sbjct 2026781 ACGGTTACTCCAACGGTATCGTCCCCATGCTCCGTGCCTACGACGCGACCGCCCGTTACG 2026722 Query 75570 TAAATCAAGCGGGGC----GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 | | | || | ||| ||| || || | || ||||| | || || |||||| Sbjct 2026721 TTGA-CCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTTGAGCCCTGGCAT 2026663 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685 || ||| | | || |||||||| | || ||||| || | || |||| ||| Sbjct 2026662 GCGGATGTTTTCGACTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCG 2026603 Query 75686 AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 | ||||| || | | || ||| | || ||||| ||||||||||| || |||| | Sbjct 2026602 CGTGATCTGTTCTACGCTCTCTGGGTCCCTGACCTCTTCATGAAGCGTGTCGAGGCCGAC 2026543 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG--CGGTGGGTG 75803 ||| | ||| | || | || || | | || || ||||| |||||| | | | | Sbjct 2026542 GGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCTGGTCTTGCCGACGTTCACTCG--G 2026485 Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGA---AGAGG---AGGGTAGAGCCAATGCGA 75857 || ||||||| |||| ||| ||||| || |||| ||||| | ||| || Sbjct 2026484 AGAAGTTTGAGACCCTGTACCAGAAGTACGAGCGTGAGGGCAAGGGTCG---CAA---GA 2026431 Query 75858 CTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACA 75916 | | | || | | || | | ||| || ||||| | | ||||| |||||||| Sbjct 2026430 CCAT-CAAGGCCCAGAAGCTCTGGTTTGCCATTCTTGAGGCCCAGACCGAGACTGGTGGC 2026372 Query 75917 CCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACA 75976 || | || || |||||||||||| ||| ||| |||||| || | |||| || Sbjct 2026371 CCCTTCATCCTCTACAAGGATGCTGCCAACCGCAAGTCTAACCAGCAGCACCTGGGCACT 2026312 Query 75977 ATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCT 76036 |||||| || || || ||||| || || | |||||| | | || ||| || Sbjct 2026311 ATCAAGTCGTCCAACCTCTGCACTGAGATCATCGAGTACTCTTCTCCCGACGAGGTTGCC 2026252 Query 76037 GTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTT 76096 || ||||| | || || || |||||||| || || | |||| |||| | | Sbjct 2026251 GTCTGCAACCTTGCCTCCATTGCCCTTCCCGCGTTCGTGGACTTTGAGAACAGCACCTAT 2026192 Query 76097 GATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATT 76156 || | | || ||||| || ||||| ||| |||||||||| || || || | ||||| Sbjct 2026191 GACTTCAAGAAGCTTCACGAGATCACCAAGGTTGTTACCAAGAACCTTGACTGCGTCATC 2026132 Query 76157 GACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATT 76216 | || | || |||||| || || || || || ||||| || | || | Sbjct 2026131 TCGCGCAACTACTACCCCGTTCAGGAGGCCAAGAACTCGAACATGCGCCATCGCCCCGTC 2026072 Query 76217 GGTTTGGGTGTTCAAGGTCTCGCGGA 76242 ||| | ||||| || ||||| || || Sbjct 2026071 GGTCTCGGTGTCCAGGGTCTTGCCGA 2026046 >seq3 Length=3725192 Score = 107 bits (118), Expect = 2e-18 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 65089 GCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGGTT 65147 || ||||| ||||||||||| ||||||||||| || ||||| ||| || || | ||| | Sbjct 3008131 GCCTTTGCATGTGTGGAGGGCATCTTCTTCTCGGGATCATT-TGCTGCCATCTTCTGGCT 3008189 Query 65148 GAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGA 65207 || ||||| |||||||||| ||||| ||||| ||||| || || || |||||||| Sbjct 3008190 CAAAAAGCGCGGTCTCATGCGTGGCCTTACATTCTCGAATGAGCTCATCTCTCGAGATGA 3008249 Query 65208 GGGTCTCCACCAGGAGTTTGC 65228 |||||| ||| || ||||| Sbjct 3008250 GGGTCTTCACACCGACTTTGC 3008270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569391200640