Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 136 1e-26 >seq1 Length=4014173 Score = 136 bits (150), Expect = 1e-26 Identities = 552/866 (64%), Gaps = 9/866 (1%) Strand=Plus/Plus Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699 |||||| ||| ||||| || |||||| ||||| | | || ||||||||| || | | Sbjct 2026283 ATCTCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGG 2026342 Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759 || |||||||||||| || ||| | ||| || ||||| |||| || || ||||| Sbjct 2026343 TTGGCAGCATCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGAATG 2026402 Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTC 155819 | |||||| | |||| || || |||| |||| || ||| || ||| Sbjct 2026403 GCAAACCAGAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCACGCTCGTACTTC 2026462 Query 155820 ATATACAGCGT-TCGGTAATCCTCACCGTAACAA--TCACTCAGTCCAGGGCACTTATCG 155876 ||||| || || || | || ||| || || || |||||||||| || Sbjct 2026463 TGGTACAGGGTCTC---AAACTTCTCCGAGTGAACGTCGGCAAGACCAGGGCACTCGGCG 2026519 Query 155877 GGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCC 155936 ||||| | || | ||| | | ||||||| ||| || | ||| || Sbjct 2026520 GGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGGACC 2026579 Query 155937 CAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGC 155996 || | ||| ||||| || || | || |||||| | |||||| ||||| || || Sbjct 2026580 CAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGG 2026639 Query 155997 TCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTC 156056 || | ||| || || ||| | ||| ||||| || || || ||||| |||| Sbjct 2026640 TCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGG 2026699 Query 156057 CTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGA 156113 | |||| |||||||| || || || || || ||| | | || ||| ||||| || Sbjct 2026700 CGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATGGGG 2026759 Query 156114 ATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTA 156173 | ||||| ||||| || |||||||| ||| | ||| || | |||| || Sbjct 2026760 ACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAGCCCTTGGCACGAATGTTG 2026819 Query 156174 TGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTA 156233 ||||| || || ||||| ||||| | || || || || ||||| ||| | || Sbjct 2026820 TGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAAGTCTTGAGGGTG 2026879 Query 156234 TTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGA 156293 | | | || || || || || || || | ||| | | || |||| || | ||| Sbjct 2026880 TCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCATGACGACATCTGA 2026939 Query 156294 GGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGAC 156353 || | || || ||||||||||| || || || | || ||| | || || | ||| Sbjct 2026940 GGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGCGCTCGGAC 2026999 Query 156354 ATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACC 156413 || | ||| ||||| | | ||| || | || ||||| |||| ||| || || Sbjct 2027000 ATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCGTGGATACCGATGGAAACA 2027059 Query 156414 CTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCG 156473 | ||| ||| ||||| |||||||| | | | || ||||| |||| || |||| | Sbjct 2027060 CGCATAATCATGTGCTGCGGACGCTCGGCCACCTTGCCGTCAATGCGCAAGAGATATGAG 2027119 Query 156474 CGTTCCAGAGTTTTAAACCCGAAATA 156499 || || || || || || ||||| || Sbjct 2027120 CGCTCGAGGGTCTTGAAACCGAAGTA 2027145 Score = 134 bits (148), Expect = 4e-26 Identities = 206/292 (71%), Gaps = 4/292 (1%) Strand=Plus/Minus Query 302554 TCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTT 302613 || || || | | ||| ||||||||| ||||| | |||||||| ||||||||||| Sbjct 2561826 TCGTAGCCGACCTTAAGGTCTTCCATGGCCTTGACAAGTCGACGCTGGATATAACCAGTC 2561767 Query 302614 GTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAAT 302673 | || || || || || || || ||||| |||||||||||||||| |||||||| Sbjct 2561766 TCGGCGGTCTTGACCGCAGTGTCGATGAGACCCTCACGACCACCCATAGCGTGGAAGAAG 2561707 Query 302674 AGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGC 302733 | ||||| ||| || || | | | ||| |||| ||||||||||||| ||| || Sbjct 2561706 AACTCTTGCGGGGTAAGACCACGCAGGTACGAGTTCTCGACGAAACCACGCGACTCAGGT 2561647 Query 302734 GAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGC 302793 || |||| ||||| || || || ||||| | || ||||| | || |||||| Sbjct 2561646 CCATAGTCGTCCTTGGAGAAATGCGGGAGGGTGCGGTGGCGGAAGCCGAACGGAATACGC 2561587 Query 302794 TTTCCATCAACGTTCTGCTGTCCCAGGCA--CGAAATCATCTGCGAAATATT 302843 ||||| || || ||||||| || | || || | ||| |||||||| || Sbjct 2561586 TTTCCTTCGACAATCTGCTGGCCGACACATCCGGA--CATTTGCGAAATGTT 2561537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817071985436