Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1 136 1e-26
>seq1
Length=4014173
Score = 136 bits (150), Expect = 1e-26
Identities = 552/866 (64%), Gaps = 9/866 (1%)
Strand=Plus/Plus
Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699
|||||| ||| ||||| || |||||| ||||| | | || ||||||||| || | |
Sbjct 2026283 ATCTCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGG 2026342
Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759
|| |||||||||||| || ||| | ||| || ||||| |||| || || |||||
Sbjct 2026343 TTGGCAGCATCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGAATG 2026402
Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTC 155819
| |||||| | |||| || || |||| |||| || ||| || |||
Sbjct 2026403 GCAAACCAGAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCACGCTCGTACTTC 2026462
Query 155820 ATATACAGCGT-TCGGTAATCCTCACCGTAACAA--TCACTCAGTCCAGGGCACTTATCG 155876
||||| || || || | || ||| || || || |||||||||| ||
Sbjct 2026463 TGGTACAGGGTCTC---AAACTTCTCCGAGTGAACGTCGGCAAGACCAGGGCACTCGGCG 2026519
Query 155877 GGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCC 155936
||||| | || | ||| | | ||||||| ||| || | ||| ||
Sbjct 2026520 GGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGGACC 2026579
Query 155937 CAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGC 155996
|| | ||| ||||| || || | || |||||| | |||||| ||||| || ||
Sbjct 2026580 CAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGG 2026639
Query 155997 TCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTC 156056
|| | ||| || || ||| | ||| ||||| || || || ||||| ||||
Sbjct 2026640 TCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGG 2026699
Query 156057 CTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGA 156113
| |||| |||||||| || || || || || ||| | | || ||| ||||| ||
Sbjct 2026700 CGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATGGGG 2026759
Query 156114 ATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTA 156173
| ||||| ||||| || |||||||| ||| | ||| || | |||| ||
Sbjct 2026760 ACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAGCCCTTGGCACGAATGTTG 2026819
Query 156174 TGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTA 156233
||||| || || ||||| ||||| | || || || || ||||| ||| | ||
Sbjct 2026820 TGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAAGTCTTGAGGGTG 2026879
Query 156234 TTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGA 156293
| | | || || || || || || || | ||| | | || |||| || | |||
Sbjct 2026880 TCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCATGACGACATCTGA 2026939
Query 156294 GGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGAC 156353
|| | || || ||||||||||| || || || | || ||| | || || | |||
Sbjct 2026940 GGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGCGCTCGGAC 2026999
Query 156354 ATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACC 156413
|| | ||| ||||| | | ||| || | || ||||| |||| ||| || ||
Sbjct 2027000 ATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCGTGGATACCGATGGAAACA 2027059
Query 156414 CTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCG 156473
| ||| ||| ||||| |||||||| | | | || ||||| |||| || |||| |
Sbjct 2027060 CGCATAATCATGTGCTGCGGACGCTCGGCCACCTTGCCGTCAATGCGCAAGAGATATGAG 2027119
Query 156474 CGTTCCAGAGTTTTAAACCCGAAATA 156499
|| || || || || || ||||| ||
Sbjct 2027120 CGCTCGAGGGTCTTGAAACCGAAGTA 2027145
Score = 134 bits (148), Expect = 4e-26
Identities = 206/292 (71%), Gaps = 4/292 (1%)
Strand=Plus/Minus
Query 302554 TCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTT 302613
|| || || | | ||| ||||||||| ||||| | |||||||| |||||||||||
Sbjct 2561826 TCGTAGCCGACCTTAAGGTCTTCCATGGCCTTGACAAGTCGACGCTGGATATAACCAGTC 2561767
Query 302614 GTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAAT 302673
| || || || || || || || ||||| |||||||||||||||| ||||||||
Sbjct 2561766 TCGGCGGTCTTGACCGCAGTGTCGATGAGACCCTCACGACCACCCATAGCGTGGAAGAAG 2561707
Query 302674 AGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGC 302733
| ||||| ||| || || | | | ||| |||| ||||||||||||| ||| ||
Sbjct 2561706 AACTCTTGCGGGGTAAGACCACGCAGGTACGAGTTCTCGACGAAACCACGCGACTCAGGT 2561647
Query 302734 GAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGC 302793
|| |||| ||||| || || || ||||| | || ||||| | || ||||||
Sbjct 2561646 CCATAGTCGTCCTTGGAGAAATGCGGGAGGGTGCGGTGGCGGAAGCCGAACGGAATACGC 2561587
Query 302794 TTTCCATCAACGTTCTGCTGTCCCAGGCA--CGAAATCATCTGCGAAATATT 302843
||||| || || ||||||| || | || || | ||| |||||||| ||
Sbjct 2561586 TTTCCTTCGACAATCTGCTGGCCGACACATCCGGA--CATTTGCGAAATGTT 2561537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817071985436
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |