Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq11 176 6e-38 seq8 158 1e-32 seq1 154 2e-31 seq4 125 9e-23 seq3 104 3e-16 seq10 93.3 5e-13 >seq11 Length=562504 Score = 176 bits (194), Expect = 6e-38 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 868708 CACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAA 868767 ||||||| |||||| ||||||| |||||| | || ||||||| |||||| | ||| Sbjct 37268 CACGCGCGACTCGAAGAAGTTGGCCTTGCCTTGCAGAGAGATCATCTCCATAAAGTCGAA 37209 Query 868768 CGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGAC 868827 ||||| | || |||||| ||| ||| || || | ||||||||||||||||||| Sbjct 37208 GGGGTTCGTCGAGTTGTAGATCTTGTCGTTGCCAAGGGCGACGAGCAGGCGGTCGGCGAC 37149 Query 868828 AAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGA 868887 ||||| ||||| ||||||||||| || |||||||| |||||||||| ||| || |||| Sbjct 37148 GAACTCAATGTATTGGCACATGAGACCAGCGTTCATACCGATGAGCGACACGGGGAGCGC 37089 Query 868888 CTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934 |||| | | ||||| | || |||| |||||||||| ||| |||| Sbjct 37088 CTCGGTAAGGAACTCCTGTTCAATCTTGACGGCCTCGCGGATAATCT 37042 Score = 141 bits (156), Expect = 1e-27 Identities = 208/291 (71%), Gaps = 15/291 (5%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || ||| | |||||| || | |||||||||||||||||| ||||| Sbjct 36971 ACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGGCCGGGCATGAGGCCACGCTT 36912 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||| | | || ||| ||||||||||| || ||||||||||| || Sbjct 36911 CTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAAGATACCTTCGACGGCGGCGAA 36852 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | ||||| ||||| |||||| | ||| || ||| | | ||||| | |||||| Sbjct 36851 CGCAATGAGGCGCTCAGCAAAG--GACGA-GCGCTCGTCGGAAATCCAACGGAGCGCCCA 36795 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 ||||||||| ||| | | | || | || |||||||| ||||||| | | | Sbjct 36794 GTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCCTTGAAGAGGTACTGC----C 36739 Query 869419 GGCCGGGTCCTTGACA------TAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 ||| || | ||| || ||||||||||| ||||| || |||||||| Sbjct 36738 GGC--GGGCGTTGTCACGAATGTAGGTGTCGATGAGGAGAGAGTAGGTCTC 36690 >seq8 Length=1441137 Score = 158 bits (174), Expect = 1e-32 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 18246 CGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTT 18305 |||| | ||||||| ||||| ||| ||||| | ||||||||| | || | ||||| | Sbjct 360694 CGTCCACCTCCAGTCTGGCACCGAGCACGGCGTGACGCTCGGCACTCCGATTGGCCTGCT 360635 Query 18306 TGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCCGCGGCC 18365 || ||| ||||||||||| |||||| |||| | | | | ||||| || Sbjct 360634 CGTCCAGAACAAGGACCAGCGGCCGCACGACTACACCGAGACGGACCTGTACCCGCGCCC 360575 Query 18366 CTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGG 18425 ||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||||| || Sbjct 360574 CTCGCACGCCGACTACACGTACCTGGCCAAGTACGGCATCAAGGCGTCGTCTGGCGGCGG 360515 Query 18426 CCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 || |||| ||||||||||| | || ||||| || |||||| | || || || Sbjct 360514 ACGTGCGTCGGCCCGCGAGACGATTGGCCGTGTCGCTGCTGGCGCGATTGCGGAAAA 360458 Score = 111 bits (122), Expect = 2e-18 Identities = 110/140 (79%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 19054 TCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCA-GGCCTCGGCGAGCCGTGC 19112 ||||||| || || || || ||| |||||| |||| | ||||||||||||||| Sbjct 360224 TCGGCGGAACCGTCACCTGTGTGATCCGCAAC-TGCCCACTTGGCCTCGGCGAGCCGGCG 360166 Query 19113 TTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGA 19172 ||||||||| ||||||||| ||||| ||||||||||| || || ||| |||| ||||| Sbjct 360165 TTTGACAAGCTCGAGGCCGTCCTCGCGCACGCCATGCTCTCCATTCCGTCCACAAAGGGC 360106 Query 19173 TTCGAGATTGGCAGCGGGTT 19192 || |||||||| |||||| Sbjct 360105 TTTGAGATTGGTTCCGGGTT 360086 >seq1 Length=4014173 Score = 154 bits (170), Expect = 2e-31 Identities = 189/258 (73%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| ||||| || || || ||| || | ||||||||||| |||| |||||||| Sbjct 2026714 CTGGTCAACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATGGGGACGATACCGTTGGA 2026773 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | |||||||| || || | ||| | ||| ||| || | ||||| | | || Sbjct 2026774 GTAACCGTTGGTTCCAGCAATGTACGAGCCCTTGGCACGAATGTTGTGAATGTGGAGACC 2026833 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||| || || | ||||||||| | ||||| ||||| |||||||||||||| || Sbjct 2026834 AATGCCACCAGCAGTCTTGGAGATCTGGGCGCAAGTCTTGAGGGTGTCGTAGATGCCGTC 2026893 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 |||||||||| ||||||| | ||||| ||||| ||||| | || ||||| | || || Sbjct 2026894 GATCGAGTCGTCCTTCATAGCGACGAGGAAGCATGACGACATCTGAGGGTGGGGAGTACC 2026953 Query 1630305 GGCGTTGAAGAGCGTGGG 1630322 ||||||||||| || || Sbjct 2026954 AGCGTTGAAGAGGGTCGG 2026971 Score = 123 bits (136), Expect = 3e-22 Identities = 328/504 (65%), Gaps = 8/504 (2%) Strand=Plus/Plus Query 1628101 ACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGAA 1628160 || ||| ||| ||||| | | || ||||||||| || || || ||| || || Sbjct 2026214 ACGAACGCGGGAAGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAG 2026273 Query 1628161 AACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTG 1628220 ||| || |||||| ||||| ||||||| |||| | | || ||||||| ||||||||| Sbjct 2026274 TACTCGATGATCTCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTA 2026333 Query 1628221 GTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCC 1628280 | | ||||| | || ||||||| ||| ||| |||| | || |||||| |||| ||| Sbjct 2026334 GACTTGCGGTTGGCAGCATCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCC 2026393 Query 1628281 GCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCC-GCGCGCG--GCCCTNN 1628337 | | ||||| |||||| || | || | || ||| ||| | ||||| Sbjct 2026394 TCAAGAATGGCAAACCAGAGCTTCTGGGC---CTTGATGGTCTTGCGACCCTTGCCCTCA 2026450 Query 1628338 NNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCAC-TCGTGCAGGCCGGG 1628396 ||||| | | || | || ||| || || || Sbjct 2026451 CGCTCGTACTTCTGGTACAGGGTCTCAAACTTCTCCGAGT-GAACGTCGGCAAGACCAGG 2026509 Query 1628397 CGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAG 1628456 ||||| || || | ||| | |||||| || ||| | | | || ||| ||||| Sbjct 2026510 GCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAG 2026569 Query 1628457 GTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTT 1628516 |||| ||| || ||||| || || || ||||| || |||||||||||||||||| Sbjct 2026570 GTCAGGGACCCAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCGTGGTT 2026629 Query 1628517 CTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAA 1628576 ||| |||||| || |||||| || || || ||||| ||||| |||||| |||||| Sbjct 2026630 CTTGCGGAGGTCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATGGCAAA 2026689 Query 1628577 GGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||| || ||||||| ||| || Sbjct 2026690 GGCACCAGGGCGCTTGTTGCCACC 2026713 Score = 114 bits (126), Expect = 2e-19 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 1254366 ATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGC 1254425 || ||||| ||||||||||||||||| |||| ||| ||| ||| | ||| | | Sbjct 3679629 ATGAGGCGGACGGCGGTCTGGATCTCACGCGACGAGATGGTGGAGCGGTGGTTGTACGAC 3679688 Query 1254426 GCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1254485 || || | ||||||||| | ||||| |||| ||||| ||||||||||| | Sbjct 3679689 GCGAGCTTGGACGCCTCGGTGGCAATGCGCTCGAAAATGTCCGACACAAACGAGTTGAGA 3679748 Query 1254486 ACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAG 1254545 | | ||||| ||||||| ||| || ||||||||| ||||||||||| |||||||| Sbjct 3679749 ATGGCCATCGCCTTGTTGCTGATACCAGTGTCGGGGTGGACCTGCTTGAGGACCTTGTAA 3679808 Query 1254546 ATGAACGACGAGTACG 1254561 ||| | | ||||||| Sbjct 3679809 ATGTAGGTAGAGTACG 3679824 Score = 91.5 bits (100), Expect = 2e-12 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 507714 TCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGC 507773 |||||||| ||||||| | ||||| |||||||| ||||| ||||| |||||| ||| Sbjct 2560674 TCAACCTGTCCGTCACATCGCCATACAATGCCGACTTCGACGGTGACGAAATGAACTTGC 2560733 Query 507774 ACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACACCATGAGCGTGTCGCTCA 507833 |||| || |||||||| | | || |||||| || | || | | || ||| Sbjct 2560734 ACGTCCCGCAGTCCGAAGAGACTCGTGCCGAGCTGTCCCAAATTGCTTGGGTCCCGCGGC 2560793 Query 507834 AGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGCCTGGTCATGGAC 507883 ||| | | ||||||||||| |||||||| |||| || | ||| |||| Sbjct 2560794 AGATCATCTCGCCGCAGGCAAACAAGCCGGTCATGGGTATCGTCCAGGAC 2560843 >seq4 Length=3306260 Score = 125 bits (138), Expect = 9e-23 Identities = 181/252 (72%), Gaps = 5/252 (2%) Strand=Plus/Minus Query 1572506 TCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCATCGATG 1572565 |||| |||| ||||||||||||||||||| || || || | ||||||||||||| | Sbjct 628100 TCGGTGTCGTTGTGGTTGAAGAGCACGACTTTGACTTCTCCCCTGTAGTCGGCATCGACG 628041 Query 1572566 ACGCCTGCGCCGACGTCGATGCC---CCTGACGGCCAGGGACGAGCGCGGCGCCACGCGC 1572622 ||||| |||||||| || ||||| | || | || ||| |||||||| ||| | | Sbjct 628040 ACGCCGGCGCCGACATCAATGCCGTGCTTGGCCGCGAGGCCCGAGCGCGCCGCTATCCTG 627981 Query 1572623 CCATAGTAGCCCGCGGGTATGGCCACGGCCAGACCGGTGCGCACCTGCGCGCGGCCGCGT 1572682 || ||| ||| ||||| | ||| ||||| | |||| ||| |||| ||||| Sbjct 627980 CCGTAGGTGCCGGCGGGAACGGCAACGGCGATCTGCGTGCTGACCATGTCGCGCCCGCGG 627921 Query 1572683 GCCGGCACGGTCGTCGTCC-CGACAGCCCACAGATCGTATCCGGCGGCGCCTGGCGTGCC 1572741 || |||| || | |||| || |||| |||||||||| || || ||| |||| ||| Sbjct 627920 GCAGGCA-GGACAGTGTCCACGGCAGCGTACAGATCGTAGCCTGCCGCGAGGGGCGAGCC 627862 Query 1572742 GCGCCGCGGAAG 1572753 |||| ||| || Sbjct 627861 GCGCGTCGGGAG 627850 Score = 98.7 bits (108), Expect = 1e-14 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 1852501 GTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAA 1852560 ||||||| ||||||| |||||| | |||||||||||| | |||||| | |||||| Sbjct 1574995 GTCGAGGAACGCGTGCAGGTCGGCGAGGAGGATCTTGACGTGGACGCCGGCATTGAGAAA 1575054 Query 1852561 GTCGGCCAGTTTGAAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGT 1852620 |||||| | || | || ||||| ||||| | | ||||||| ||| |||||||| || Sbjct 1575055 GTCGGCAATCTTCATGAGCGGCACGCAGTAGGCAATGTGCGGGCGGCCGGTCGGCGCGGT 1575114 Query 1852621 GCCCCAATA 1852629 |||||| || Sbjct 1575115 GCCCCAGTA 1575123 >seq3 Length=3725192 Score = 104 bits (114), Expect = 3e-16 Identities = 126/170 (74%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 868682 GAGACGT--GCGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCT 868739 ||||||| |||| |||| ||| || |||||| |||||||||||||| ||||| | Sbjct 3008614 GAGACGTTTGCGCGTTGG--TACGAGCTGACGCGCGACTCGAAAAAGTTGGCTTTGCCTT 3008557 Query 868740 CGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATC 868799 |||||||| | ||||||||| ||| || |||| | |||||| ||| || | | Sbjct 3008556 GCAGCGAGATGAGCTCCATCCAGTCGAAGGGATTGGTTGCGTTGTAGATCTTCTCATAGC 3008497 Query 868800 CGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATG 868849 | || | ||| |||||||| ||||| || || ||||||||||||||| Sbjct 3008496 CCAGTGCGACGACAAGGCGGTCAGCGACGAATTCCATGTACTGGCACATG 3008447 >seq10 Length=825374 Score = 93.3 bits (102), Expect = 5e-13 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 92616 GTGAGGGCCTCCTGCACCTGGAAGCGGTCGGAAAACATGTCGACGATGCGCGGGATCTTG 92675 ||||| |||||| ||||||| ||| | |||| | ||| | || |||| || |||| Sbjct 461795 GTGAGACGCTCCTGGACCTGGAGGCGACGAGCAAACGTTTCGGCAATACGCGCGAGCTTG 461854 Query 92676 CTCAGGCCGATGATCCTGCCCGT-GGGCAGGTAGCCCACGTGGGCCTTGCCCATAAAGGG 92734 || || || | | | ||| || ||| | ||| || | | |||||| | ||||| Sbjct 461855 CTGAGACCAAGCA-CGTGCTGGTTGGGGATGTACCCAATGGAAATCTTGCCGGTGAAGGG 461913 Query 92735 CAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACGATCACCATCTCGCC 92794 || || ||||||||||||| ||| | | ||| | ||||||||| || ||||| ||| | Sbjct 461914 CACCATGTGGTGCTCGCACAGCGAGTACACGTCAATGTCGCGCACAATGACCATTTCGTC 461973 Query 92795 CGAGGCCTCGGCAAAGAGCGCGTCGCCGATGGCCTCGGCCAGC 92837 | |||||||||| | ||||||| ||| | || | |||| Sbjct 461974 GTGGTCCTCGGCAAACACCGCGTCGTTGATCACGTCCGTCAGC 462016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107136902188876