Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq11 176 6e-38
seq8 158 1e-32
seq1 154 2e-31
seq4 125 9e-23
seq3 104 3e-16
seq10 93.3 5e-13
>seq11
Length=562504
Score = 176 bits (194), Expect = 6e-38
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 868708 CACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAA 868767
||||||| |||||| ||||||| |||||| | || ||||||| |||||| | |||
Sbjct 37268 CACGCGCGACTCGAAGAAGTTGGCCTTGCCTTGCAGAGAGATCATCTCCATAAAGTCGAA 37209
Query 868768 CGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGAC 868827
||||| | || |||||| ||| ||| || || | |||||||||||||||||||
Sbjct 37208 GGGGTTCGTCGAGTTGTAGATCTTGTCGTTGCCAAGGGCGACGAGCAGGCGGTCGGCGAC 37149
Query 868828 AAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGA 868887
||||| ||||| ||||||||||| || |||||||| |||||||||| ||| || ||||
Sbjct 37148 GAACTCAATGTATTGGCACATGAGACCAGCGTTCATACCGATGAGCGACACGGGGAGCGC 37089
Query 868888 CTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934
|||| | | ||||| | || |||| |||||||||| ||| ||||
Sbjct 37088 CTCGGTAAGGAACTCCTGTTCAATCTTGACGGCCTCGCGGATAATCT 37042
Score = 141 bits (156), Expect = 1e-27
Identities = 208/291 (71%), Gaps = 15/291 (5%)
Strand=Plus/Minus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| ||||| || ||| | |||||| || | |||||||||||||||||| |||||
Sbjct 36971 ACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGGCCGGGCATGAGGCCACGCTT 36912
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||||||||| ||||| | | || ||| ||||||||||| || ||||||||||| ||
Sbjct 36911 CTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAAGATACCTTCGACGGCGGCGAA 36852
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358
| ||||| ||||| |||||| | ||| || ||| | | ||||| | ||||||
Sbjct 36851 CGCAATGAGGCGCTCAGCAAAG--GACGA-GCGCTCGTCGGAAATCCAACGGAGCGCCCA 36795
Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418
||||||||| ||| | | | || | || |||||||| ||||||| | | |
Sbjct 36794 GTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCCTTGAAGAGGTACTGC----C 36739
Query 869419 GGCCGGGTCCTTGACA------TAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
||| || | ||| || ||||||||||| ||||| || ||||||||
Sbjct 36738 GGC--GGGCGTTGTCACGAATGTAGGTGTCGATGAGGAGAGAGTAGGTCTC 36690
>seq8
Length=1441137
Score = 158 bits (174), Expect = 1e-32
Identities = 177/237 (75%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 18246 CGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTT 18305
|||| | ||||||| ||||| ||| ||||| | ||||||||| | || | ||||| |
Sbjct 360694 CGTCCACCTCCAGTCTGGCACCGAGCACGGCGTGACGCTCGGCACTCCGATTGGCCTGCT 360635
Query 18306 TGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCCGCGGCC 18365
|| ||| ||||||||||| |||||| |||| | | | | ||||| ||
Sbjct 360634 CGTCCAGAACAAGGACCAGCGGCCGCACGACTACACCGAGACGGACCTGTACCCGCGCCC 360575
Query 18366 CTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGG 18425
||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||||| ||
Sbjct 360574 CTCGCACGCCGACTACACGTACCTGGCCAAGTACGGCATCAAGGCGTCGTCTGGCGGCGG 360515
Query 18426 CCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482
|| |||| ||||||||||| | || ||||| || |||||| | || || ||
Sbjct 360514 ACGTGCGTCGGCCCGCGAGACGATTGGCCGTGTCGCTGCTGGCGCGATTGCGGAAAA 360458
Score = 111 bits (122), Expect = 2e-18
Identities = 110/140 (79%), Gaps = 2/140 (1%)
Strand=Plus/Minus
Query 19054 TCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCA-GGCCTCGGCGAGCCGTGC 19112
||||||| || || || || ||| |||||| |||| | |||||||||||||||
Sbjct 360224 TCGGCGGAACCGTCACCTGTGTGATCCGCAAC-TGCCCACTTGGCCTCGGCGAGCCGGCG 360166
Query 19113 TTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGA 19172
||||||||| ||||||||| ||||| ||||||||||| || || ||| |||| |||||
Sbjct 360165 TTTGACAAGCTCGAGGCCGTCCTCGCGCACGCCATGCTCTCCATTCCGTCCACAAAGGGC 360106
Query 19173 TTCGAGATTGGCAGCGGGTT 19192
|| |||||||| ||||||
Sbjct 360105 TTTGAGATTGGTTCCGGGTT 360086
>seq1
Length=4014173
Score = 154 bits (170), Expect = 2e-31
Identities = 189/258 (73%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| ||||| || || || ||| || | ||||||||||| |||| ||||||||
Sbjct 2026714 CTGGTCAACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATGGGGACGATACCGTTGGA 2026773
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
| |||||||| || || | ||| | ||| ||| || | ||||| | | ||
Sbjct 2026774 GTAACCGTTGGTTCCAGCAATGTACGAGCCCTTGGCACGAATGTTGTGAATGTGGAGACC 2026833
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||||| || || | ||||||||| | ||||| ||||| |||||||||||||| ||
Sbjct 2026834 AATGCCACCAGCAGTCTTGGAGATCTGGGCGCAAGTCTTGAGGGTGTCGTAGATGCCGTC 2026893
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|||||||||| ||||||| | ||||| ||||| ||||| | || ||||| | || ||
Sbjct 2026894 GATCGAGTCGTCCTTCATAGCGACGAGGAAGCATGACGACATCTGAGGGTGGGGAGTACC 2026953
Query 1630305 GGCGTTGAAGAGCGTGGG 1630322
||||||||||| || ||
Sbjct 2026954 AGCGTTGAAGAGGGTCGG 2026971
Score = 123 bits (136), Expect = 3e-22
Identities = 328/504 (65%), Gaps = 8/504 (2%)
Strand=Plus/Plus
Query 1628101 ACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGAA 1628160
|| ||| ||| ||||| | | || ||||||||| || || || ||| || ||
Sbjct 2026214 ACGAACGCGGGAAGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAG 2026273
Query 1628161 AACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTG 1628220
||| || |||||| ||||| ||||||| |||| | | || ||||||| |||||||||
Sbjct 2026274 TACTCGATGATCTCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTA 2026333
Query 1628221 GTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCC 1628280
| | ||||| | || ||||||| ||| ||| |||| | || |||||| |||| |||
Sbjct 2026334 GACTTGCGGTTGGCAGCATCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCC 2026393
Query 1628281 GCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCC-GCGCGCG--GCCCTNN 1628337
| | ||||| |||||| || | || | || ||| ||| | |||||
Sbjct 2026394 TCAAGAATGGCAAACCAGAGCTTCTGGGC---CTTGATGGTCTTGCGACCCTTGCCCTCA 2026450
Query 1628338 NNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCAC-TCGTGCAGGCCGGG 1628396
||||| | | || | || ||| || || ||
Sbjct 2026451 CGCTCGTACTTCTGGTACAGGGTCTCAAACTTCTCCGAGT-GAACGTCGGCAAGACCAGG 2026509
Query 1628397 CGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAG 1628456
||||| || || | ||| | |||||| || ||| | | | || ||| |||||
Sbjct 2026510 GCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAG 2026569
Query 1628457 GTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTT 1628516
|||| ||| || ||||| || || || ||||| || ||||||||||||||||||
Sbjct 2026570 GTCAGGGACCCAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCGTGGTT 2026629
Query 1628517 CTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAA 1628576
||| |||||| || |||||| || || || ||||| ||||| |||||| ||||||
Sbjct 2026630 CTTGCGGAGGTCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATGGCAAA 2026689
Query 1628577 GGCGCCCTTGCGCTTGCCGCCGCC 1628600
||| || ||||||| ||| ||
Sbjct 2026690 GGCACCAGGGCGCTTGTTGCCACC 2026713
Score = 114 bits (126), Expect = 2e-19
Identities = 143/196 (73%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 1254366 ATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGC 1254425
|| ||||| ||||||||||||||||| |||| ||| ||| ||| | ||| | |
Sbjct 3679629 ATGAGGCGGACGGCGGTCTGGATCTCACGCGACGAGATGGTGGAGCGGTGGTTGTACGAC 3679688
Query 1254426 GCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1254485
|| || | ||||||||| | ||||| |||| ||||| ||||||||||| |
Sbjct 3679689 GCGAGCTTGGACGCCTCGGTGGCAATGCGCTCGAAAATGTCCGACACAAACGAGTTGAGA 3679748
Query 1254486 ACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAG 1254545
| | ||||| ||||||| ||| || ||||||||| ||||||||||| ||||||||
Sbjct 3679749 ATGGCCATCGCCTTGTTGCTGATACCAGTGTCGGGGTGGACCTGCTTGAGGACCTTGTAA 3679808
Query 1254546 ATGAACGACGAGTACG 1254561
||| | | |||||||
Sbjct 3679809 ATGTAGGTAGAGTACG 3679824
Score = 91.5 bits (100), Expect = 2e-12
Identities = 122/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 507714 TCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGC 507773
|||||||| ||||||| | ||||| |||||||| ||||| ||||| |||||| |||
Sbjct 2560674 TCAACCTGTCCGTCACATCGCCATACAATGCCGACTTCGACGGTGACGAAATGAACTTGC 2560733
Query 507774 ACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACACCATGAGCGTGTCGCTCA 507833
|||| || |||||||| | | || |||||| || | || | | || |||
Sbjct 2560734 ACGTCCCGCAGTCCGAAGAGACTCGTGCCGAGCTGTCCCAAATTGCTTGGGTCCCGCGGC 2560793
Query 507834 AGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGCCTGGTCATGGAC 507883
||| | | ||||||||||| |||||||| |||| || | ||| ||||
Sbjct 2560794 AGATCATCTCGCCGCAGGCAAACAAGCCGGTCATGGGTATCGTCCAGGAC 2560843
>seq4
Length=3306260
Score = 125 bits (138), Expect = 9e-23
Identities = 181/252 (72%), Gaps = 5/252 (2%)
Strand=Plus/Minus
Query 1572506 TCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCATCGATG 1572565
|||| |||| ||||||||||||||||||| || || || | ||||||||||||| |
Sbjct 628100 TCGGTGTCGTTGTGGTTGAAGAGCACGACTTTGACTTCTCCCCTGTAGTCGGCATCGACG 628041
Query 1572566 ACGCCTGCGCCGACGTCGATGCC---CCTGACGGCCAGGGACGAGCGCGGCGCCACGCGC 1572622
||||| |||||||| || ||||| | || | || ||| |||||||| ||| | |
Sbjct 628040 ACGCCGGCGCCGACATCAATGCCGTGCTTGGCCGCGAGGCCCGAGCGCGCCGCTATCCTG 627981
Query 1572623 CCATAGTAGCCCGCGGGTATGGCCACGGCCAGACCGGTGCGCACCTGCGCGCGGCCGCGT 1572682
|| ||| ||| ||||| | ||| ||||| | |||| ||| |||| |||||
Sbjct 627980 CCGTAGGTGCCGGCGGGAACGGCAACGGCGATCTGCGTGCTGACCATGTCGCGCCCGCGG 627921
Query 1572683 GCCGGCACGGTCGTCGTCC-CGACAGCCCACAGATCGTATCCGGCGGCGCCTGGCGTGCC 1572741
|| |||| || | |||| || |||| |||||||||| || || ||| |||| |||
Sbjct 627920 GCAGGCA-GGACAGTGTCCACGGCAGCGTACAGATCGTAGCCTGCCGCGAGGGGCGAGCC 627862
Query 1572742 GCGCCGCGGAAG 1572753
|||| ||| ||
Sbjct 627861 GCGCGTCGGGAG 627850
Score = 98.7 bits (108), Expect = 1e-14
Identities = 99/129 (77%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 1852501 GTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAA 1852560
||||||| ||||||| |||||| | |||||||||||| | |||||| | ||||||
Sbjct 1574995 GTCGAGGAACGCGTGCAGGTCGGCGAGGAGGATCTTGACGTGGACGCCGGCATTGAGAAA 1575054
Query 1852561 GTCGGCCAGTTTGAAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGT 1852620
|||||| | || | || ||||| ||||| | | ||||||| ||| |||||||| ||
Sbjct 1575055 GTCGGCAATCTTCATGAGCGGCACGCAGTAGGCAATGTGCGGGCGGCCGGTCGGCGCGGT 1575114
Query 1852621 GCCCCAATA 1852629
|||||| ||
Sbjct 1575115 GCCCCAGTA 1575123
>seq3
Length=3725192
Score = 104 bits (114), Expect = 3e-16
Identities = 126/170 (74%), Gaps = 4/170 (2%)
Strand=Plus/Minus
Query 868682 GAGACGT--GCGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCT 868739
||||||| |||| |||| ||| || |||||| |||||||||||||| ||||| |
Sbjct 3008614 GAGACGTTTGCGCGTTGG--TACGAGCTGACGCGCGACTCGAAAAAGTTGGCTTTGCCTT 3008557
Query 868740 CGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATC 868799
|||||||| | ||||||||| ||| || |||| | |||||| ||| || | |
Sbjct 3008556 GCAGCGAGATGAGCTCCATCCAGTCGAAGGGATTGGTTGCGTTGTAGATCTTCTCATAGC 3008497
Query 868800 CGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATG 868849
| || | ||| |||||||| ||||| || || |||||||||||||||
Sbjct 3008496 CCAGTGCGACGACAAGGCGGTCAGCGACGAATTCCATGTACTGGCACATG 3008447
>seq10
Length=825374
Score = 93.3 bits (102), Expect = 5e-13
Identities = 156/223 (70%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 92616 GTGAGGGCCTCCTGCACCTGGAAGCGGTCGGAAAACATGTCGACGATGCGCGGGATCTTG 92675
||||| |||||| ||||||| ||| | |||| | ||| | || |||| || ||||
Sbjct 461795 GTGAGACGCTCCTGGACCTGGAGGCGACGAGCAAACGTTTCGGCAATACGCGCGAGCTTG 461854
Query 92676 CTCAGGCCGATGATCCTGCCCGT-GGGCAGGTAGCCCACGTGGGCCTTGCCCATAAAGGG 92734
|| || || | | | ||| || ||| | ||| || | | |||||| | |||||
Sbjct 461855 CTGAGACCAAGCA-CGTGCTGGTTGGGGATGTACCCAATGGAAATCTTGCCGGTGAAGGG 461913
Query 92735 CAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACGATCACCATCTCGCC 92794
|| || ||||||||||||| ||| | | ||| | ||||||||| || ||||| ||| |
Sbjct 461914 CACCATGTGGTGCTCGCACAGCGAGTACACGTCAATGTCGCGCACAATGACCATTTCGTC 461973
Query 92795 CGAGGCCTCGGCAAAGAGCGCGTCGCCGATGGCCTCGGCCAGC 92837
| |||||||||| | ||||||| ||| | || | ||||
Sbjct 461974 GTGGTCCTCGGCAAACACCGCGTCGTTGATCACGTCCGTCAGC 462016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107136902188876
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