Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq11 105 6e-18
>seq11
Length=562504
Score = 105 bits (116), Expect = 6e-18
Identities = 149/208 (72%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || || ||||| |||||||| ||| | |
Sbjct 28825 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACCCTCGAAGTCGAATCGTCG 28884
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || || || || ||||| ||
Sbjct 28885 GACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAG 28944
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | ||||||||||| || ||||| ||||| | | | | || || || |||
Sbjct 28945 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCTGACTACAAC 29004
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910
|| || ||||| ||||| || || ||||
Sbjct 29005 ATCCAGAAGGAGTCGACCCTTCATCTTG 29032
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || || ||||| ||||| || || | ||
Sbjct 29053 ATGCAGATCTTCGTCAAGACTCTCACAGGCAAGACCATTACCCTCGAGGTCGAGTCGTCC 29112
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| || ||||| || || || |||||||| ||
Sbjct 29113 GACACTATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAG 29172
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | ||||||||||| || ||||| || || | | | | || || || |||
Sbjct 29173 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGACGGTCGTACCCTCTCGGACTACAAC 29232
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| |||||||| || ||||| ||| | || | || |||| || ||
Sbjct 29233 ATCCAAAAGGAGTCCACACTTCACCTCGTTCTCCGCCTGCGTGGTGG 29279
Score = 82.4 bits (90), Expect = 7e-11
Identities = 131/187 (70%), Gaps = 1/187 (1%)
Strand=Plus/Plus
Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784
|| ||||| ||||| || || || || || || | | ||||| | || | || ||
Sbjct 28618 CTTACCGGCAAAACGATCACTCTTGAGGTTGAGTCTTCGGACACCATCGACAACGTCAAG 28677
Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844
|||||||| ||||| || || || || ||||| || || ||| | |||||||||||
Sbjct 28678 GCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCATCTTTGCCGGC 28737
Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904
|| ||||| ||||| | | | | || || || ||||| || ||||| ||||| ||
Sbjct 28738 AAGCAGCTCGAGGACGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTT 28797
Query 24905 CA-CTTG 24910
|| ||||
Sbjct 28798 CATCTTG 28804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449897442535840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |