Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq11 178 2e-38 seq1 161 2e-33 seq3 100 5e-15 seq4 93.3 7e-13 seq2 93.3 7e-13 >seq11 Length=562504 Score = 178 bits (196), Expect = 2e-38 Identities = 193/254 (76%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || | ||||||||| | ||||||| |||||| ||||||| |||||| | | Sbjct 37293 TGACACCAGACTTGGCATATGCCGACACGCGCGACTCGAAGAAGTTGGCCTTGCCTTGCA 37234 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||||| |||||| | ||| ||||| | || |||| ||| ||| || | Sbjct 37233 GAGAGATCATCTCCATAAAGTCGAAGGGGTTCGTCGAGTTGTAGATCTTGTCGTTGCCAA 37174 Query 794011 G--CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 | ||||| |||||||||||||||||||| |||||||| ||||||||||| | ||||| Sbjct 37173 GGGCGACG--AGCAGGCGGTCGGCGACGAACTCAATGTATTGGCACATGAGACCAGCGTT 37116 Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 ||| |||||||||| |||||| |||| |||| | | ||||| | || |||| |||||| Sbjct 37115 CATACCGATGAGCGACACGGGGAGCGCCTCGGTAAGGAACTCCTGTTCAATCTTGACGGC 37056 Query 794129 CTCGATGATGATCT 794142 |||| ||| |||| Sbjct 37055 CTCGCGGATAATCT 37042 Score = 138 bits (152), Expect = 2e-26 Identities = 216/305 (71%), Gaps = 13/305 (4%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || ||| | |||||| || |||||||||||||||||| ||||| Sbjct 36971 ACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGGCCGGGCATGAGGCCACGCTT 36912 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACT-GCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 ||||||||| ||||| | | |||| ||| ||||||||||| || ||||||||||| | Sbjct 36911 CTTGAGCCAGAAGATCG-AGGCAAACGAGCCAGAGAAAAAGATACCTTCGACGGCGGCGA 36853 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 | | | ||| ||||| ||||| | | || ||| | | ||||| | ||||| Sbjct 36852 ACGCAATGAGGCGCTCAGCAAAGGA---CGAGCGCTCGTCGGAAATCCAACGGAGCGCCC 36796 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | || ||||| ||| | | |||| | || |||||||| ||||||| | | Sbjct 36795 AGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCCTTGAAGAGGTACTGC---- 36740 Query 794579 CGACCGG----GTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATG 794634 || | || ||| | |||||||||||||||||| ||||||||||| ||||| ||| Sbjct 36739 CGGCGGGCGTTGTCACGAATGTAGGTGTCGATGAGGAGAGAGTAGGTCTCGGAGTGAATG 36680 Query 794635 TTTTC 794639 || || Sbjct 36679 TTCTC 36675 >seq1 Length=4014173 Score = 161 bits (178), Expect = 2e-33 Identities = 191/256 (75%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||||||||||||||| ||||| |||| ||||||| | | || || ||| | | | Sbjct 3679570 ACTTGGTGACGGCCTTGGTGCCCTCGGAGATGGCGTGCTTCGAGAGCTCACCGGGGAGAA 3679629 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG-C 1485591 | ||||| ||||||||||||||||| || | ||| ||| ||| | ||| || || | Sbjct 3679630 TGAGGCGGACGGCGGTCTGGATCTCACGCGACGAGATGGTGGAGCGGTGGTT-GTACGAC 3679688 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 || || | ||||||||| | ||||| |||| ||||| ||||||||||| | Sbjct 3679689 GCGAGCTTGGACGCCTCGGTGGCAATGCGCTCGAAAATGTCCGACACAAACGAGTTGAGA 3679748 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || | ||||| |||||| ||| || ||||||||| ||||||||||| ||||||||| Sbjct 3679749 ATGGCCATCGCCTTGTTGCTGATACCAGTGTCGGGGTGGACCTGCTTGAGGACCTTGTAA 3679808 Query 1485712 ACAAAGGACGAGTACG 1485727 | ||| ||||||| Sbjct 3679809 ATGTAGGTAGAGTACG 3679824 Score = 127 bits (140), Expect = 3e-23 Identities = 183/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| || || || || || ||| || | ||||||||||| || | |||||||| Sbjct 2026714 CTGGTCAACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATGGGGACGATACCGTTGGA 2026773 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | |||||||| || || | ||| | |||| ||| || | ||||| | | || Sbjct 2026774 GTAACCGTTGGTTCCAGCAATGTACGAGCCCTTGGCACGAATGTTGTGAATGTGGAGACC 2026833 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||||| || || | ||||||||| | ||||| | || || || ||||||||||| || Sbjct 2026834 AATGCCACCAGCAGTCTTGGAGATCTGGGCGCAAGTCTTGAGGGTGTCGTAGATGCCGTC 2026893 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 |||||||||| ||||||| | | || ||||| ||||| | || ||| | | || || Sbjct 2026894 GATCGAGTCGTCCTTCATAGCGACGAGGAAGCATGACGACATCTGAGGGTGGGGAGTACC 2026953 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 || |||||||| || || Sbjct 2026954 AGCGTTGAAGAGGGTCGG 2026971 Score = 111 bits (122), Expect = 2e-18 Identities = 293/447 (66%), Gaps = 16/447 (4%) Strand=Plus/Plus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| || || ||| ||||| ||||||| |||| | | |||||||||| ||||||||| Sbjct 2026275 ACTCGATGATCTCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTAG 2026334 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 | ||||| | || ||||||| || ||| |||| |||| |||||| |||| ||| Sbjct 2026335 ACTTGCGGTTGGCAGCATCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCT 2026394 Query 2071694 TGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCG----GCCCTNN 2071749 | ||||| |||| | || |||| || | || ||| ||||| Sbjct 2026395 CAAGAATGGCAAACCAGA----GCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCA 2026450 Query 2071750 NNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTG-GCAC-TCGTGCAGGCCGG 2071807 | |||| ||||| | | ||| | | || ||| || || | Sbjct 2026451 CGCTCGTACTTCTGGTACAGGGTCTCAAA--CTTCTCCGAGTGAACGTCGGCAAGACCAG 2026508 Query 2071808 GCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACA 2071867 | ||||| ||||| | ||| | |||||| ||| | | | | || || ||| || | Sbjct 2026509 GGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGA 2026568 Query 2071868 GGTC--GCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTG 2071925 |||| | || ||| || |||| || ||||| ||||| || ||||||||||||||| Sbjct 2026569 GGTCAGGGAC--CCAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCGTG 2026626 Query 2071926 GTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGC 2071985 |||||| ||||| || |||||| | || || ||||| ||||| |||||| ||| Sbjct 2026627 GTTCTTGCGGAGGTCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATGGC 2026686 Query 2071986 AAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 |||||| || ||||||| ||| || Sbjct 2026687 AAAGGCACCAGGGCGCTTGTTGCCACC 2026713 Score = 89.7 bits (98), Expect = 8e-12 Identities = 118/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 429069 AAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACTTTACGGCG 429128 ||||||||||||||||| | || || || |||||||||||| ||| |||| | ||| Sbjct 2560206 AAGGGCAAGGAGGGCCGTCTTCGTGGAAACCTCATGGGCAAGCGTGTCGACTTCTCCGCG 2560265 Query 429129 CGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGTGCCCTATGAG 429188 || |||| |||| |||||| | ||| | | ||| |||| || || |||| || Sbjct 2560266 CGTACCGTTATCACGGGTGACCCCAACATCCAGCTCGACCAGGTCGGTGT-CCCTCGTAG 2560324 Query 429189 -ATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGACGCCCT 429228 |||| || || ||||| | || |||||||||||||||| Sbjct 2560325 TATCGCCATGATCCTCACGTACCCGGAGCGCGTGACGCCCT 2560365 >seq3 Length=3725192 Score = 100 bits (110), Expect = 5e-15 Identities = 109/143 (76%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976 |||||| |||||||||||||| ||||| | |||||||| | ||||||||| ||| Sbjct 3008587 ACGCGCGACTCGAAAAAGTTGGCTTTGCCTTGCAGCGAGATGAGCTCCATCCAGTCGAAG 3008528 Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG--CGACGCAAGCAGGCGGTCGGCGA 794034 || |||| | |||| |||||| | || || ||||| | |||||||| |||| Sbjct 3008527 GGATTGGTTGCGTTGTAGATCTTCTCATAGCCCAGTGCGACGACA--AGGCGGTCAGCGA 3008470 Query 794035 CGAATTCAATGTACTGGCACATG 794057 ||||||| ||||||||||||||| Sbjct 3008469 CGAATTCCATGTACTGGCACATG 3008447 >seq4 Length=3306260 Score = 93.3 bits (102), Expect = 7e-13 Identities = 176/253 (70%), Gaps = 7/253 (3%) Strand=Plus/Minus Query 2017590 TCGGCGTCGGTATGGTTAAAGAGCATGACGCCAACCTCGCCTCGATAGTCGGCATCGATG 2017649 |||| |||| | ||||| ||||||| ||| || || || | ||||||||||||| | Sbjct 628100 TCGGTGTCGTTGTGGTTGAAGAGCACGACTTTGACTTCTCCCCTGTAGTCGGCATCGACG 628041 Query 2017650 ACGCCGGCGCCGACGTCGATGCCG-GCACGG--GCCATCGACGAGCGCGGCGCCACACGC 2017706 |||||||||||||| || |||||| || || || | |||||||| ||| | | Sbjct 628040 ACGCCGGCGCCGACATCAATGCCGTGCTTGGCCGCGAGGCCCGAGCGCGCCGCTATCCTG 627981 Query 2017707 CCGTAATAGCCCGCCGGTATGGCCACGGCCAGTCTGATT--TGCACCTGTGCGCGACCGC 2017764 ||||| ||| || || | ||| ||||| | |||| | || | ||| |||| |||| Sbjct 627980 CCGTAGGTGCCGGCGGGAACGGCAACGGCGA-TCTGCGTGCTGACCATGT-CGCGCCCGC 627923 Query 2017765 GTGCCGGTACGGTGGTTGTCTCGACAGCCCACAGGTCGTATCCGGCGGCGCCCGGTGTGC 2017824 | || || | | || | || |||| |||| ||||| || || ||| || | || Sbjct 627922 GGGCAGGCAGGACAGTGTCCACGGCAGCGTACAGATCGTAGCCTGCCGCGAGGGGCGAGC 627863 Query 2017825 CGCGCGACGGCAG 2017837 |||||| ||| || Sbjct 627862 CGCGCGTCGGGAG 627850 >seq2 Length=3730214 Score = 93.3 bits (102), Expect = 7e-13 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||||||||||||||| ||||| |||| ||||||| | | || || ||| ||| || Sbjct 2919035 ACTTGGTGACGGCCTTGGTGCCCTCCGAGATGGCGTGCTTCGAGAGCTCACCGGGCAGGA 2918976 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG-C 1485591 | || || || |||||||| |||||||| | || ||| || | ||| || || | Sbjct 2918975 TAAGACGAACAGCGGTCTGAATCTCGCGCGACGAAATGGTGGAACGGTGGTT-GTACGAC 2918917 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 || || |||||||||| |||| || || | ||||| ||| || ||||| | Sbjct 2918916 GCAAGCTTCGAGGCCTCGGTGGCGATCCGCTCAAAGATGTCCGAGACGAATGAGTTGAGA 2918857 Query 1485652 ATCGACATCGATTTGTTG 1485669 || | ||| | |||||| Sbjct 2918856 ATAGCCATGGCCTTGTTG 2918839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916243421512292