Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2 118 7e-22 seq11 113 3e-20 seq1 93.3 3e-14 >seq2 Length=3730214 Score = 118 bits (130), Expect = 7e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||||||||| ||||| |||||||| ||| |||| |||| Sbjct 3658292 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCC 3658351 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || || |||||||| | || | ||||||||||| Sbjct 3658352 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 3658411 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || || | ||| || ||| Sbjct 3658412 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTC 3658471 Query 34946 TTTCCCGTGAGGGTCTTTAC 34965 || |||||||||||||| || Sbjct 3658472 TTGCCCGTGAGGGTCTTGAC 3658491 >seq11 Length=562504 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| |||||| || ||||| |||||||| ||| | || | || Sbjct 29264 AGAACGAGGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTACGACCGTCT 29205 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| ||||| || || |||||||| | || | ||||||||||| Sbjct 29204 TCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCC 29145 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | |||||| || | ||| |||||| Sbjct 29144 TGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCGACCTCGAGGGTAATGGTC 29085 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| ||||| || ||||||||||| Sbjct 29084 TTGCCTGTGAGAGTCTTGACGAAGATCTGCAT 29053 Score = 109 bits (120), Expect = 4e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || |||| ||| ||||||||| ||||| || ||||| ||| | || | || Sbjct 28527 AGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTACGACCGTCC 28468 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||||||||| ||||| || || |||||||| |||| | ||||||||||| Sbjct 28467 TCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 28408 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | |||||| |||| ||| |||||| Sbjct 28407 TGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTC 28348 Query 34946 TTTCCCGTGAGGGTCTTTAC 34965 || ||||| || ||||| || Sbjct 28347 TTGCCCGTAAGAGTCTTGAC 28328 Score = 109 bits (120), Expect = 4e-19 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| ||||||||| ||||| ||||| || ||| | || | || Sbjct 29036 AGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCGTCC 28977 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| ||||| || || |||||||| |||| | ||||||||||| Sbjct 28976 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCC 28917 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || || || | ||||| || | ||||| || | ||| || Sbjct 28916 TGGATCTTGGCCTTCAC--AT--TGTCGATGGTGTCCGACGATTCGACTTCGAGGGTAAT 28861 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || ||||| ||||| || ||||||||||| Sbjct 28860 GGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 28825 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| || || |||| | || || || ||||| || ||||| Sbjct 29472 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 29413 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || |||||||| | || | ||||||||||| | || || || ||| Sbjct 29412 GATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTT 29353 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || | ||| || |||| || || ||||| || ||||||||||| || Sbjct 29352 GTCGATAGTGTCGGACGACTCAACTTCAAGAGTGATAGTCTTGCCAGTGAGGGTCTTGAC 29293 Query 34966 AAAGATCTGCAT 34977 || |||||||| Sbjct 29292 GAAAATCTGCAT 29281 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| ||||||||| ||||| |||||||| ||| | || | || Sbjct 28808 AGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCGTCC 28749 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||| ||||| || || |||||||| |||| | ||||||||||| Sbjct 28748 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 28690 >seq1 Length=4014173 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 34802 TAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGG 34861 |||||||| ||| |||| | || || || ||||| ||||||||||| || || |||||| Sbjct 637233 TAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGG 637174 Query 34862 TCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTG 34921 || | || | ||||||||||| | || || |||||| | |||| || Sbjct 637173 TCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCCGAC 637114 Query 34922 GCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | |||||| || | ||| |||||||| || ||||||||||| || Sbjct 637113 GACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAAC 637070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692688857332