Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 2e-12 >seq7 Length=1643429 Score = 87.8 bits (96), Expect = 2e-12 Identities = 184/271 (68%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 147232 AGCTGGTCCACGCCCTGGCCCCCGTAGT--TTGTCCCGCAGTCCACGTACCTGGCCCCAA 147289 ||||||||||| || |||||| |||| | | || | ||||| | ||| ||||| | Sbjct 674477 AGCTGGTCCACTCCTTGGCCCGCGTAATCGTCGT-CGGCAGT-CTTGTATTCCGCCCCGA 674534 Query 147290 AGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGC 147349 | || | ||||||||| || ||||| ||||| ||||| || | | || || || Sbjct 674535 AATGGCGCCACTGGAAACCATACACGGGCCCGAGGTCCCCCTCCCGCCGATGACCGAGGC 674594 Query 147350 CCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGG 147409 | | || | |||| ||||| || ||||| | |||||||||| ||| ||||| | Sbjct 674595 CGACGCGGTCGAGATACTCGCGGCTCCCGTTGCCGTCCCAGATATGCACGCCCTTTTCCT 674654 Query 147410 AGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCC 147469 |||| ||||||| | || | || |||||||| |||||||| | || || | Sbjct 674655 GCAGCTTGCGCCCGTCCGTGCAACCGCTGACAAACCAGAGGAGCTCCTCAATGACGCCAC 674714 Query 147470 TCCAAAAGACCCTCTTGGTGGTCAGCAGGGG 147500 ||| || | |||||| || || ||||| Sbjct 674715 GGGTAAACACGCGCTTGGTCGTAAGGAGGGG 674745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583487795779200