Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq11 149 9e-30 seq1 123 4e-22 seq3 89.7 7e-12 >seq11 Length=562504 Score = 149 bits (164), Expect = 9e-30 Identities = 191/258 (74%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577 || |||| ||| |||||||||| |||| || | ||||| | | |||| |||| || | Sbjct 37039 AGAAGATTATCCGCGAGGCCGTCAAGATTGAACAGGAGTTCCTTACCGAGGCGCTCCCCG 37098 Query 1456578 TGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGA 1456637 || |||||||||| |||||||| ||||||||||| |||||||| || |||||||| Sbjct 37099 TGTCGCTCATCGGTATGAACGCTGGT-CTCATGTGCCAATACATTGAGTTC-GTCGCCGA 37156 Query 1456638 CCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCAT 1456697 ||||||||||| || || ||| | || ||| |||| || | ||||| ||| | Sbjct 37157 CCGCCTGCTCGTCGCCCTTGGCAAC-GACAAGATCTACAACTCGACGAACCCCTTCGACT 37215 Query 1456698 GGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-GAGT 1456756 |||||| ||||||| || | |||||| ||||||| |||||| |||||| | | | Sbjct 37216 TTATGGAGATGATCTCTCTGCAAGGCAAGGCCAACTTCTTCGAGTCGCGCGTGTCGGCAT 37275 Query 1456757 ACGCCAAGGCCGGCGTCA 1456774 | |||||| | || |||| Sbjct 37276 ATGCCAAGTCTGGTGTCA 37293 Score = 129 bits (142), Expect = 8e-24 Identities = 191/266 (72%), Gaps = 11/266 (4%) Strand=Plus/Plus Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC----CC 1456070 || ||||| ||||| || |||||||| ||||| |||||||||||| | ||| || Sbjct 36675 GAGAACATTCACTCCGAGACCTACTCTCTCCTCATCGACACCTACATTCGTGACAACGCC 36734 Query 1456071 GGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 | || | | ||||||| |||||||| || | || | | | ||| ||||| Sbjct 36735 CGCCG----GCAGTACCTCTTCAAGGCCATCGAGACCATCCCCTGCATCAAGAAGAAGGC 36790 Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTC 1456190 |||||||||| | ||||| | | ||| | |||| | |||||| ||||| ||| | Sbjct 36791 CGACTGGGCGCTCCGTTGGATTTCCGACGAGCG-CTCGTC-CTTTGCTGAGCGCCTCATT 36848 Query 1456191 GGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTC 1456249 | || |||| |||||| || ||||||||||| ||| || | | ||||| |||||| Sbjct 36849 GCGTTCGCCGCCGTCGAAGGTATCTTTTTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTC 36908 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||| |||||||||||||| || Sbjct 36909 AAGAAGCGTGGCCTCATGCCCGGCCT 36934 >seq1 Length=4014173 Score = 123 bits (136), Expect = 4e-22 Identities = 178/248 (72%), Gaps = 10/248 (4%) Strand=Plus/Minus Query 724897 CGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCAT 724956 ||||||| ||| || |||||||| ||||||||||| |||||| || | | || Sbjct 3679824 CGTACTCTACCTACATTTACAAGGTCCTCAAGCAGGTCCACCCCGACACTGGT-----AT 3679770 Query 724957 CCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG 725016 | | |||||| | ||| | || | ||||||||||| ||||| |||| ||||| | Sbjct 3679769 CAGC-AACAAGGCGATGGCCATTCTCAACTCGTTTGTGTCGGACATTTTCGAGCGCATTG 3679711 Query 725017 GCACCGAGGCCGGTCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGA 725074 ||||||||| ||| || ||| | |||| | ||| ||| ||| |||| || Sbjct 3679710 CCACCGAGGC--GTCCAAGCTCGCGTCGTACAACCACCGCTCCACCATCTCGTCGCGTGA 3679653 Query 725075 GATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGA 725134 ||||||||||||||| ||||| || | | ||| || || | | ||||||| ||||||| Sbjct 3679652 GATCCAGACCGCCGTCCGCCTCATTCTCCCCGGTGAGCTCTCGAAGCACGCCATCTCCGA 3679593 Query 725135 GGGCACCA 725142 |||||||| Sbjct 3679592 GGGCACCA 3679585 Score = 87.8 bits (96), Expect = 3e-11 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 263233 GCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGAC 263292 || |||||||| | | | | |||||||| |||||||||||| | |||| | || Sbjct 2025492 GCCGCCGACCGTGGTGCTTTTATCGACCAGTCGCAGTCGCTCAACATCCACCTGTCGAAC 2025433 Query 263293 CCGACGGCCGAG-AGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGAC 263351 || || | ||| |||| || |||||| || | ||| || || || ||||| Sbjct 2025432 CCTTCGTTCTCTCAGC-TCACTTCCATGCACTTTTACGGCTGGAAGCGTGGTCTTAAGAC 2025374 Query 263352 TGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGA 263408 ||||||||||| || || ||||| || | |||||||||||||| ||||||||||| Sbjct 2025373 CGGCATGTACTACCTTCGTACCCGCCCGTCGGCCAACGCCATTCAGTTCACCGTCGA 2025317 Score = 86.0 bits (94), Expect = 9e-11 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 1818076 AGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGAT-CTCATAGGGCACGCCCACC 1818134 |||||||||||||||| || | ||||| || || |||| || |||| || || ||| Sbjct 2560365 AGGGCGTCACGCGCTCCGGGTACGTGAGGATCATGGCGATACTACGAGGG-ACACCGACC 2560307 Query 1818135 TCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTGACGCGC 1818194 | ||| | | || | |||||| |||| |||| ||||||| |||| ||| ||| Sbjct 2560306 TGGTCGAGCTGGATGTTGGGGTCACCCGTGATAACGGTACGCGCGGAGAAGTCGACACGC 2560247 Query 1818195 TTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTT 1818235 ||||||||| || || || | | ||||||||||||||| Sbjct 2560246 TTGCCCATGAGGTTTCCACGAAGACGGCCCTCCTTGCCCTT 2560206 >seq3 Length=3725192 Score = 89.7 bits (98), Expect = 7e-12 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 1456607 CATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAG 1456666 ||||||||||||||| ||||| ||||| |||||||| ||| || || |||| | || Sbjct 3008447 CATGTGCCAGTACATGGAATTC-GTCGCTGACCGCCTTGTCGTCGCACTGGGCTATG-AG 3008504 Query 1456667 AAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAG 1456726 ||| |||| | |||| || ||| ||||||||| | |||||||| | ||||| Sbjct 3008505 AAGATCTACAACGCAACCAATCCCTTCGACTGGATGGAGCTCATCTCGCTGCAAGGCAAA 3008564 Query 1456727 ACCAACTTTTTCGAGCGCCGCGT 1456749 |||||||||||||| ||||| Sbjct 3008565 GCCAACTTTTTCGAGTCGCGCGT 3008587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177808499348536