Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq11 107 2e-18 seq2 86.0 6e-12 >seq11 Length=562504 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| |||||||| || | | ||| || |||| || |||||||| || ||||| Sbjct 29244 CTCCTTTTGGATGTTGTAGTCCGAGAGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAA 29185 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||||| | |||||||||| ||||| ||||| || Sbjct 29184 GATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGCCTTCA-CGT 29126 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| ||| || ||||| | || || || || || || | ||| || | Sbjct 29125 TGTCGATAGTGTCGGACGACTCGACCTCGAGGGTAATGGTCTTGCCTGTGAGAGTCTTGA 29066 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 29065 CGAAGATCTGCAT 29053 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 35534 TGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGC 35593 || ||||| |||||| ||||||||||| |||| | || || |||| || |||||| Sbjct 29483 TGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGC 29424 Query 35594 TTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTT 35653 || ||||| || || | ||||||||||| | |||| || |||||||||| ||||| Sbjct 29423 TTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTC 29364 Query 35654 TGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 ||||| |||| | | |||||| ||| || || || | ||||| || || || || Sbjct 29363 GCCTTCA-CGTTGTCGATAGTGTCGGACGACTCAACTTCAAGAGTGATAGTCTTGCCAGT 29305 Query 35713 CAAAGTTTTCACAAATATCTGCAT 35736 | || || || || |||||||| Sbjct 29304 GAGGGTCTTGACGAAAATCTGCAT 29281 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || |||| || |||||||| || ||||| Sbjct 29016 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAA 28957 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | | |||||||||| |||||| ||||| | | Sbjct 28956 GATGAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTGGCCTTCACATT 28897 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| |||||| || || | || || || || || || | ||| || || Sbjct 28896 GTCGATGGTGTCCGACGATTCGACTTCGAGGGTAATGGTCTTGCCAGTGAGAGTCTTGAC 28837 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 28836 GAAGATCTGCAT 28825 Score = 86.0 bits (94), Expect = 6e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | ||| || |||| || |||||||| || ||||| Sbjct 28507 CTCCTTCTGGATGTTGTAATCCGAGAGGGTACGACCGTCCTCGAGCTGCTTTCCGGCAAA 28448 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| ||||| ||| | || Sbjct 28447 GATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGT 28389 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| || || ||||| | ||||| || || ||||| | ||| || | Sbjct 28388 TGTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGAGTCTTGA 28329 Query 35724 C 35724 | Sbjct 28328 C 28328 Score = 86.0 bits (94), Expect = 6e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || |||| || |||||||| || ||||| Sbjct 28788 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAA 28729 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 28728 GATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 28670 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 || | | ||||| || || ||||| | ||||||||||| || || Sbjct 28669 TGTCGATGGTGTCCGAAGACTCAACCTCAAGAGTGATCGTTTTGCCGGT 28621 >seq2 Length=3730214 Score = 86.0 bits (94), Expect = 6e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || | || || |||||||| || || || Sbjct 3658312 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 3658371 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 3658372 GATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 3658430 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 || | | |||||| ||| |||||||| | ||||| || || ||||| Sbjct 3658431 TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGT 3658479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793442222240