Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq11 138 1e-27 seq2 111 2e-19 >seq11 Length=562504 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || ||||| |||||||| ||||||||||| | ||| || ||| || Sbjct 29261 ACGAGGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTACGACCGTCTTCA 29202 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| || | ||||||||| ||||| || || || || || || ||| Sbjct 29201 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGA 29142 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || ||| | ||||||||||| || || ||||| |||||||| || Sbjct 29141 ATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCGACCTCGAGGGTAATGGTCTTG 29082 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||| || ||||| || ||||| Sbjct 29081 CCTGTGAGAGTCTTGACGAAGATCTGCAT 29053 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | || ||||| | ||| || ||||| ||||||||||||||| | Sbjct 29507 CCTCCACGAAGACGAAGAACAAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGAA 29448 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| ||||| || || || | ||||||||| ||||| || Sbjct 29447 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGGGA 29388 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || || || ||| | ||||||||||| || || Sbjct 29387 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCAACT 29328 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || || || || || | || || |||||||| ||||| Sbjct 29327 TCAAGAGTGATAGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 29281 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || || || || || || ||||| || ||||||||||| Sbjct 29051 CCACCACGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 28992 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| ||||| ||||| || | ||||||||| |||||||| Sbjct 28991 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 28932 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || || || ||| | ||||| |||||||| || Sbjct 28931 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCCGACGATTCGACT 28872 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| |||||||| || || || | ||| || ||||| || ||||| Sbjct 28871 TCGAGGGTAATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 28825 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || || || || || || ||||| || ||||||||||| | Sbjct 28823 CCACCACGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 28764 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| |||||||| ||||| ||||| || | ||||||||| |||||||| Sbjct 28763 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 28704 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | ||||| || || || || Sbjct 28703 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCAACC 28644 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 || ||||| || ||||| ||||| Sbjct 28643 TCAAGAGTGATCGTTTTGCCGGT 28621 >seq2 Length=3730214 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134481 GCCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAG 134540 ||| | || || | ||| || | |||||||| || || || ||||| || ||||||||| Sbjct 3658271 GCCATACCACCACGGAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAG 3658330 Query 134541 TCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCG 134600 || || |||| | || |||||||| ||||| || || || | |||||||| ||| Sbjct 3658331 TCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCG 3658390 Query 134601 GGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGAT 134660 || || ||||| || || || || || || ||||| ||| | ||||||||||| Sbjct 3658391 GGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGAC 3658450 Query 134661 TCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| ||||| || || || || || || Sbjct 3658451 TCCACCTCGAGGGTGATAGTCTTGCCCGT 3658479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398223110560