Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 205 1e-47 seq3 104 3e-17 >seq1 Length=4014173 Score = 205 bits (226), Expect = 1e-47 Identities = 677/1043 (65%), Gaps = 21/1043 (2%) Strand=Plus/Plus Query 111053 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 111112 || || ||||| || ||||| | ||| | || | || ||||| || || || || Sbjct 2026046 TCGGCAAGACCCTGGACACCGAGACCGACGGGGCGATGGCGCATGTTCGAGTTCTTGGCC 2026105 Query 111113 GTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 111172 || |||||| || | || | ||||| | || || || |||||||||| ||| Sbjct 2026106 TCCTGAACGGGGTAGTAGTTGCGCGAGATGACGCAGTCAAGGTTCTTGGTAACAACCTTG 2026165 Query 111173 GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA 111232 ||||| || ||||| || | | ||| | |||| |||| | || || ||| Sbjct 2026166 GTGATCTCGTGAAGCTTCTTGAAGTCATAGGTGCTGTTCTCAAAGTCCACGAACGCGGGA 2026225 Query 111233 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 111292 ||||| || || || | ||||| || || ||| || | | |||||| | || Sbjct 2026226 AGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCGATGATC 2026285 Query 111293 TCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG 111352 || || || | |||||| ||| || || |||| | || |||||| ||| |||| Sbjct 2026286 TCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGGTTG 2026345 Query 111353 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCC 111412 |||||||||||||| ||| |||| || ||||| ||||| | | ||||| || Sbjct 2026346 GCAGCATCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGAATGGCA 2026405 Query 111413 TTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGT-CCCTCCGCCTCGTACTT 111468 ||| | | || | | || | |||| ||| ||| | ||||| ||||||||| Sbjct 2026406 AACCAGAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTGCCCTCACGCTCGTACTT 2026461 Query 111469 TGTGTAGAGGGCTTCAAACTCCTCACCCACCG--CGTCGGAGAGACCTGGTGCCTTGTCT 111526 ||| |||| ||||||| ||| | | | |||||| ||||| || || | | Sbjct 2026462 CTGGTACAGGGTCTCAAACTTCTC--CGAGTGAACGTCGGCAAGACCAGGGCACTCGGCG 2026519 Query 111527 GGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 111586 || || | || | ||| | ||| | |||| || ||||||||||| ||||| || | | Sbjct 2026520 GGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGGACC 2026579 Query 111587 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 111646 || || | | || ||||| | ||| |||| || | || ||||| || | Sbjct 2026580 CAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGG 2026639 Query 111647 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC---- 111702 |||||||| || | | |||||| ||||| |||||||| |||| || | | || Sbjct 2026640 TCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGG 2026699 Query 111703 CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 111762 | | | | ||| | || | || || || || || |||| | | || ||||| || Sbjct 2026700 CGCTTGTTG-CCACCCTGGTCAACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATGGG 2026758 Query 111763 AATAATACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTCACA 111820 | ||||| | || | ||| || || || || |||||| ||||| | | Sbjct 2026759 GACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAG--CCCTTGGCACGAATG 2026816 Query 111821 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 111880 | || ||||| | ||||| || ||||| ||| ||||| || || || | | || Sbjct 2026817 TTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAAGTCTTGAGG 2026876 Query 111881 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 111940 || | ||||| |||| ||| ||||| ||||| | |||| |||||||| |||||| Sbjct 2026877 GTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCATGACGACATC 2026936 Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || || |||||||| ||||||||||| || | |||||| |||| | | | Sbjct 2026937 TGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGCGCTCG 2026996 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 ||||| || ||| ||||| | ||| || |||| || |||||||| ||||| | Sbjct 2026997 GACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCGTGGATACCGATGGAA 2027056 Query 112061 ACCCGCATGAACATGTACTGTGG 112083 || ||||| | ||||| ||| || Sbjct 2027057 ACACGCATAATCATGTGCTGCGG 2027079 >seq3 Length=3725192 Score = 104 bits (114), Expect = 3e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| |||||||||||||| || || || ||||| ||||| || || Sbjct 3008270 GCAAAGTCGGTGTGAAGACCCTCATCTCGAGAGATGAGCTCATTCGAGAATGTAAGGCCA 3008211 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 122777 |||||||||| ||||| || | ||| | || || ||| ||||| || ||||||||||| Sbjct 3008210 CGCATGAGACCGCGCTTTTTGAGCCAGAAGATGGCAGCA-AATGATCCCGAGAAGAAGAT 3008152 Query 122778 ACCCTCCACACACGCAAACGC 122798 ||||||||||| ||||| || Sbjct 3008151 GCCCTCCACACATGCAAAGGC 3008131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031780188800