Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq1 205 1e-47
seq3 104 3e-17
>seq1
Length=4014173
Score = 205 bits (226), Expect = 1e-47
Identities = 677/1043 (65%), Gaps = 21/1043 (2%)
Strand=Plus/Plus
Query 111053 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 111112
|| || ||||| || ||||| | ||| | || | || ||||| || || || ||
Sbjct 2026046 TCGGCAAGACCCTGGACACCGAGACCGACGGGGCGATGGCGCATGTTCGAGTTCTTGGCC 2026105
Query 111113 GTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 111172
|| |||||| || | || | ||||| | || || || |||||||||| |||
Sbjct 2026106 TCCTGAACGGGGTAGTAGTTGCGCGAGATGACGCAGTCAAGGTTCTTGGTAACAACCTTG 2026165
Query 111173 GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA 111232
||||| || ||||| || | | ||| | |||| |||| | || || |||
Sbjct 2026166 GTGATCTCGTGAAGCTTCTTGAAGTCATAGGTGCTGTTCTCAAAGTCCACGAACGCGGGA 2026225
Query 111233 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 111292
||||| || || || | ||||| || || ||| || | | |||||| | ||
Sbjct 2026226 AGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCGATGATC 2026285
Query 111293 TCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG 111352
|| || || | |||||| ||| || || |||| | || |||||| ||| ||||
Sbjct 2026286 TCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGGTTG 2026345
Query 111353 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCC 111412
|||||||||||||| ||| |||| || ||||| ||||| | | ||||| ||
Sbjct 2026346 GCAGCATCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGAATGGCA 2026405
Query 111413 TTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGT-CCCTCCGCCTCGTACTT 111468
||| | | || | | || | |||| ||| ||| | ||||| |||||||||
Sbjct 2026406 AACCAGAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTGCCCTCACGCTCGTACTT 2026461
Query 111469 TGTGTAGAGGGCTTCAAACTCCTCACCCACCG--CGTCGGAGAGACCTGGTGCCTTGTCT 111526
||| |||| ||||||| ||| | | | |||||| ||||| || || | |
Sbjct 2026462 CTGGTACAGGGTCTCAAACTTCTC--CGAGTGAACGTCGGCAAGACCAGGGCACTCGGCG 2026519
Query 111527 GGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 111586
|| || | || | ||| | ||| | |||| || ||||||||||| ||||| || | |
Sbjct 2026520 GGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGGACC 2026579
Query 111587 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 111646
|| || | | || ||||| | ||| |||| || | || ||||| || |
Sbjct 2026580 CAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGG 2026639
Query 111647 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC---- 111702
|||||||| || | | |||||| ||||| |||||||| |||| || | | ||
Sbjct 2026640 TCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGG 2026699
Query 111703 CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 111762
| | | | ||| | || | || || || || || |||| | | || ||||| ||
Sbjct 2026700 CGCTTGTTG-CCACCCTGGTCAACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATGGG 2026758
Query 111763 AATAATACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTCACA 111820
| ||||| | || | ||| || || || || |||||| ||||| | |
Sbjct 2026759 GACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAG--CCCTTGGCACGAATG 2026816
Query 111821 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 111880
| || ||||| | ||||| || ||||| ||| ||||| || || || | | ||
Sbjct 2026817 TTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAAGTCTTGAGG 2026876
Query 111881 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 111940
|| | ||||| |||| ||| ||||| ||||| | |||| |||||||| ||||||
Sbjct 2026877 GTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCATGACGACATC 2026936
Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000
|| || || |||||||| ||||||||||| || | |||||| |||| | | |
Sbjct 2026937 TGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGCGCTCG 2026996
Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060
||||| || ||| ||||| | ||| || |||| || |||||||| ||||| |
Sbjct 2026997 GACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCGTGGATACCGATGGAA 2027056
Query 112061 ACCCGCATGAACATGTACTGTGG 112083
|| ||||| | ||||| ||| ||
Sbjct 2027057 ACACGCATAATCATGTGCTGCGG 2027079
>seq3
Length=3725192
Score = 104 bits (114), Expect = 3e-17
Identities = 109/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
||||| || ||| |||||||||||||| || || || ||||| ||||| || ||
Sbjct 3008270 GCAAAGTCGGTGTGAAGACCCTCATCTCGAGAGATGAGCTCATTCGAGAATGTAAGGCCA 3008211
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 122777
|||||||||| ||||| || | ||| | || || ||| ||||| || |||||||||||
Sbjct 3008210 CGCATGAGACCGCGCTTTTTGAGCCAGAAGATGGCAGCA-AATGATCCCGAGAAGAAGAT 3008152
Query 122778 ACCCTCCACACACGCAAACGC 122798
||||||||||| ||||| ||
Sbjct 3008151 GCCCTCCACACATGCAAAGGC 3008131
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628031780188800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |