Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 259 6e-64 seq11 163 4e-35 seq3 131 2e-25 >seq1 Length=4014173 Score = 259 bits (286), Expect = 6e-64 Identities = 684/1038 (66%), Gaps = 25/1038 (2%) Strand=Plus/Plus Query 118527 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG 118586 || || ||||| ||||||||||| || | |||||||| | ||| || || ||| || Sbjct 2026046 TCGGCAAGACCCTGGACACCGAGACCGACGGGGCGATGGCGCATGTTCGAGTTCTTGGCC 2026105 Query 118587 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 118646 || ||||| || | || | ||| || | | || || ||||| |||||||| Sbjct 2026106 TCCTGAACGGGGTAGTAGTTGCGCGAGATGACGCAGTCAAGGTTCTTGGTAACAACCTTG 2026165 Query 118647 GTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGA 118706 ||||| || |||||||| | | | ||| | ||| |||| | || || ||| Sbjct 2026166 GTGATCTCGTGAAGCTTCTTGAAGTCATAGGTGCTGTTCTCAAAGTCCACGAACGCGGGA 2026225 Query 118707 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 118766 ||||| || || || || || || || | ||| || | || |||||| || || Sbjct 2026226 AGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCGATGATC 2026285 Query 118767 TCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 118826 || ||||| | ||| || ||| || ||||||| || || || || ||||| ||| Sbjct 2026286 TCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGGTTG 2026345 Query 118827 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 118886 ||||||||||| || ||| | || || ||||| || |||| || ||||| || Sbjct 2026346 GCAGCATCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGAATGGCA 2026405 Query 118887 TTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGC---CCCTCTTCCTCGTACTT 118942 ||||| | || | || | ||| ||| | | ||||| ||||||||| Sbjct 2026406 AACCAGAGCTTCTGGGCCTTGA----TGGTCTTGCGACCCTTGCCCTCACGCTCGTACTT 2026461 Query 118943 TGTGTAGAGGGCTTCAAACTCTTCACCCACGG--CCTCTGAGAGCCCTGGTGCCTTATCT 119000 ||| |||| ||||||| || || | | | || | || || || || | Sbjct 2026462 CTGGTACAGGGTCTCAAACT--TCTCCGAGTGAACGTCGGCAAGACCAGGGCACTCGGCG 2026519 Query 119001 GGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 119060 ||||| | ||| | ||| | ||| | |||| || ||||||||||||||||| |||| | Sbjct 2026520 GGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGGACC 2026579 Query 119061 CAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 119120 ||||| || |||| ||||| || |||| | || || | || || || || | Sbjct 2026580 CAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGG 2026639 Query 119121 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTA 119180 || | ||||| | | |||||| ||||| || || ||||| | || | | || | Sbjct 2026640 TCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACC---A 2026696 Query 119181 CGACGA------CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATT 119234 | || ||| |||||| || || | || || |||| | |||| ||||| Sbjct 2026697 GGGCGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATG 2026756 Query 119235 GGAATGATACCATCGGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGA 119292 || | |||||| | ||| | || || || || ||| ||||| | | |||| | | Sbjct 2026757 GGGACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAGCCCT--TGGCACGAA 2026814 Query 119293 CATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGA 119352 | ||| ||||| | |||||| || || || ||| ||||| || ||||| | ||| Sbjct 2026815 TGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAAGTCTTGA 2026874 Query 119353 GACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACA 119412 | || ||||||| || ||||||||||| |||| | |||| ||||||||| ||||| Sbjct 2026875 GGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCATGACGACA 2026934 Query 119413 TTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTT 119472 | ||||| ||| ||||||||||||||||| || || | ||||| |||| | | Sbjct 2026935 TCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGCGCT 2026994 Query 119473 GGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCG 119532 |||||| || ||| ||||| | ||| | |||| || ||||| |||||||| | Sbjct 2026995 CGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCGTGGATACCGATGG 2027054 Query 119533 AGACCCGCATAAACATGT 119550 | || ||||||| ||||| Sbjct 2027055 AAACACGCATAATCATGT 2027072 >seq11 Length=562504 Score = 163 bits (180), Expect = 4e-35 Identities = 371/547 (68%), Gaps = 11/547 (2%) Strand=Plus/Minus Query 129717 CCAG-CTTGCCATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 129775 |||| |||| |||| || || ||| |||||||||||| | ||| || | || | Sbjct 37288 CCAGACTTGGCATATGCCGACACGCGCGACTCGAAGAAGTTGGCCTTGCCTTGCAGAGAG 37229 Query 129776 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTG 129834 || |||||||||| || || |||||| | ||||| | || || | | |||| Sbjct 37228 ATCATCTCCATAAAGTCGAAGGGGTTCGTCGAGTTGTAGATCT-TGTCGTTGCCAAGGGC 37170 Query 129835 TTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACC 129894 ||| || || || | |||| |||||||||| | |||| | | ||||||||| Sbjct 37169 GACGAGCAGGCGGTCGGCGACGAACTCAATGTATTGGCACATGAGACCAGCGTTCATACC 37110 Query 129895 GATGAGGTTACATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCC 129953 |||||| ||| ||| ||||| || | |||| ||| ||||| | || || || | Sbjct 37109 GATGAGCG-ACACGGGGAGCGCCTCGGTAAGGAACTCCTGTTCAATCTTGACGGCCTCGC 37051 Query 129954 GCACGATGGCGTGAATG--GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC 130011 | | || | |||| || |||| || | | ||| | | |||| || Sbjct 37050 GGATAATCTTCTCAATGAGGTTGGGGTGC--GGGCGACGGCGGAGATGGGTGAAAAGCAG 36993 Query 130012 CACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 130071 |||||| || ||| |||||||||||||| |||||||| || || ||||| || Sbjct 36992 ACAGGCAAAGTCGGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAG 36933 Query 130072 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 130131 || |||||||| || |||||||| | |||||| |||| ||| ||||||||||| || Sbjct 36932 GCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAA 36873 Query 130132 GATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC 130191 ||| || || || |||||||||| ||| |||||||||||||| || | | || Sbjct 36872 GATACCTTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGA-CGAGCGCTCGTCGG 36814 Query 130192 AAA-CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTT 130250 ||| ||| | |||||| | ||||| |||| ||| || |||| ||||| ||| || | Sbjct 36813 AAATCCAACGGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCCT 36754 Query 130251 CAAAGAG 130257 ||||| Sbjct 36753 TGAAGAG 36747 >seq3 Length=3725192 Score = 131 bits (144), Expect = 2e-25 Identities = 198/275 (72%), Gaps = 10/275 (4%) Strand=Plus/Minus Query 129886 GTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCAC 129945 ||| |||||||| || ||| || ||||||||| | |||| ||||||| || ||||| Sbjct 3008400 GTTGATACCGATAAGCGCACAAGGAAGCGCGTCCGTCAGGAACTCCTTCTCTATTTCCAC 3008341 Query 129946 AGCTTCCCGCACGATGGCGTGAA--TGGTC-TCCGTGCCAGGTCTATTGCGCAAAGTC-- 130000 ||||| |||||||| || || | || || | || | ||| | | | | Sbjct 3008340 CGCTTCGGTCACGATGGTGTAAACTTCCTCGTCAGAGCAGCGGTGCTTGAG--ATGCCCA 3008283 Query 130001 TTGAAGAGTTCCACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTC 130060 | || ||| |||| |||| || ||| |||||||| || || |||||||| |||||| Sbjct 3008282 TAGAGGAGG--CACG-CAAAGTCGGTGTGAAGACCCTCATCTCGAGAGATGAGCTCATTC 3008226 Query 130061 GAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAG 130120 ||||| || || |||||||||| ||||| || | |||||| || ||| |||||| Sbjct 3008225 GAGAATGTAAGGCCACGCATGAGACCGCGCTTTTTGAGCCAGAAGATGGCAGCAAATGAT 3008166 Query 130121 CCAGAGAAGAAGATCCCCTCCACACACGCGAACGC 130155 || ||||||||||| ||||||||||| || || || Sbjct 3008165 CCCGAGAAGAAGATGCCCTCCACACATGCAAAGGC 3008131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434983547680