Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq1 259 6e-64
seq11 163 4e-35
seq3 131 2e-25
>seq1
Length=4014173
Score = 259 bits (286), Expect = 6e-64
Identities = 684/1038 (66%), Gaps = 25/1038 (2%)
Strand=Plus/Plus
Query 118527 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG 118586
|| || ||||| ||||||||||| || | |||||||| | ||| || || ||| ||
Sbjct 2026046 TCGGCAAGACCCTGGACACCGAGACCGACGGGGCGATGGCGCATGTTCGAGTTCTTGGCC 2026105
Query 118587 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 118646
|| ||||| || | || | ||| || | | || || ||||| ||||||||
Sbjct 2026106 TCCTGAACGGGGTAGTAGTTGCGCGAGATGACGCAGTCAAGGTTCTTGGTAACAACCTTG 2026165
Query 118647 GTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGA 118706
||||| || |||||||| | | | ||| | ||| |||| | || || |||
Sbjct 2026166 GTGATCTCGTGAAGCTTCTTGAAGTCATAGGTGCTGTTCTCAAAGTCCACGAACGCGGGA 2026225
Query 118707 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 118766
||||| || || || || || || || | ||| || | || |||||| || ||
Sbjct 2026226 AGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCGATGATC 2026285
Query 118767 TCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 118826
|| ||||| | ||| || ||| || ||||||| || || || || ||||| |||
Sbjct 2026286 TCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGGTTG 2026345
Query 118827 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 118886
||||||||||| || ||| | || || ||||| || |||| || ||||| ||
Sbjct 2026346 GCAGCATCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGAATGGCA 2026405
Query 118887 TTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGC---CCCTCTTCCTCGTACTT 118942
||||| | || | || | ||| ||| | | ||||| |||||||||
Sbjct 2026406 AACCAGAGCTTCTGGGCCTTGA----TGGTCTTGCGACCCTTGCCCTCACGCTCGTACTT 2026461
Query 118943 TGTGTAGAGGGCTTCAAACTCTTCACCCACGG--CCTCTGAGAGCCCTGGTGCCTTATCT 119000
||| |||| ||||||| || || | | | || | || || || || |
Sbjct 2026462 CTGGTACAGGGTCTCAAACT--TCTCCGAGTGAACGTCGGCAAGACCAGGGCACTCGGCG 2026519
Query 119001 GGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 119060
||||| | ||| | ||| | ||| | |||| || ||||||||||||||||| |||| |
Sbjct 2026520 GGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGGACC 2026579
Query 119061 CAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 119120
||||| || |||| ||||| || |||| | || || | || || || || |
Sbjct 2026580 CAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGG 2026639
Query 119121 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTA 119180
|| | ||||| | | |||||| ||||| || || ||||| | || | | || |
Sbjct 2026640 TCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACC---A 2026696
Query 119181 CGACGA------CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATT 119234
| || ||| |||||| || || | || || |||| | |||| |||||
Sbjct 2026697 GGGCGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATG 2026756
Query 119235 GGAATGATACCATCGGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGA 119292
|| | |||||| | ||| | || || || || ||| ||||| | | |||| | |
Sbjct 2026757 GGGACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAGCCCT--TGGCACGAA 2026814
Query 119293 CATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGA 119352
| ||| ||||| | |||||| || || || ||| ||||| || ||||| | |||
Sbjct 2026815 TGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAAGTCTTGA 2026874
Query 119353 GACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACA 119412
| || ||||||| || ||||||||||| |||| | |||| ||||||||| |||||
Sbjct 2026875 GGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCATGACGACA 2026934
Query 119413 TTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTT 119472
| ||||| ||| ||||||||||||||||| || || | ||||| |||| | |
Sbjct 2026935 TCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGCGCT 2026994
Query 119473 GGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCG 119532
|||||| || ||| ||||| | ||| | |||| || ||||| |||||||| |
Sbjct 2026995 CGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCGTGGATACCGATGG 2027054
Query 119533 AGACCCGCATAAACATGT 119550
| || ||||||| |||||
Sbjct 2027055 AAACACGCATAATCATGT 2027072
>seq11
Length=562504
Score = 163 bits (180), Expect = 4e-35
Identities = 371/547 (68%), Gaps = 11/547 (2%)
Strand=Plus/Minus
Query 129717 CCAG-CTTGCCATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 129775
|||| |||| |||| || || ||| |||||||||||| | ||| || | || |
Sbjct 37288 CCAGACTTGGCATATGCCGACACGCGCGACTCGAAGAAGTTGGCCTTGCCTTGCAGAGAG 37229
Query 129776 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTG 129834
|| |||||||||| || || |||||| | ||||| | || || | | ||||
Sbjct 37228 ATCATCTCCATAAAGTCGAAGGGGTTCGTCGAGTTGTAGATCT-TGTCGTTGCCAAGGGC 37170
Query 129835 TTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACC 129894
||| || || || | |||| |||||||||| | |||| | | |||||||||
Sbjct 37169 GACGAGCAGGCGGTCGGCGACGAACTCAATGTATTGGCACATGAGACCAGCGTTCATACC 37110
Query 129895 GATGAGGTTACATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCC 129953
|||||| ||| ||| ||||| || | |||| ||| ||||| | || || || |
Sbjct 37109 GATGAGCG-ACACGGGGAGCGCCTCGGTAAGGAACTCCTGTTCAATCTTGACGGCCTCGC 37051
Query 129954 GCACGATGGCGTGAATG--GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC 130011
| | || | |||| || |||| || | | ||| | | |||| ||
Sbjct 37050 GGATAATCTTCTCAATGAGGTTGGGGTGC--GGGCGACGGCGGAGATGGGTGAAAAGCAG 36993
Query 130012 CACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 130071
|||||| || ||| |||||||||||||| |||||||| || || ||||| ||
Sbjct 36992 ACAGGCAAAGTCGGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAG 36933
Query 130072 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 130131
|| |||||||| || |||||||| | |||||| |||| ||| ||||||||||| ||
Sbjct 36932 GCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAA 36873
Query 130132 GATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC 130191
||| || || || |||||||||| ||| |||||||||||||| || | | ||
Sbjct 36872 GATACCTTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGA-CGAGCGCTCGTCGG 36814
Query 130192 AAA-CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTT 130250
||| ||| | |||||| | ||||| |||| ||| || |||| ||||| ||| || |
Sbjct 36813 AAATCCAACGGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCCT 36754
Query 130251 CAAAGAG 130257
|||||
Sbjct 36753 TGAAGAG 36747
>seq3
Length=3725192
Score = 131 bits (144), Expect = 2e-25
Identities = 198/275 (72%), Gaps = 10/275 (4%)
Strand=Plus/Minus
Query 129886 GTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCAC 129945
||| |||||||| || ||| || ||||||||| | |||| ||||||| || |||||
Sbjct 3008400 GTTGATACCGATAAGCGCACAAGGAAGCGCGTCCGTCAGGAACTCCTTCTCTATTTCCAC 3008341
Query 129946 AGCTTCCCGCACGATGGCGTGAA--TGGTC-TCCGTGCCAGGTCTATTGCGCAAAGTC-- 130000
||||| |||||||| || || | || || | || | ||| | | | |
Sbjct 3008340 CGCTTCGGTCACGATGGTGTAAACTTCCTCGTCAGAGCAGCGGTGCTTGAG--ATGCCCA 3008283
Query 130001 TTGAAGAGTTCCACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTC 130060
| || ||| |||| |||| || ||| |||||||| || || |||||||| ||||||
Sbjct 3008282 TAGAGGAGG--CACG-CAAAGTCGGTGTGAAGACCCTCATCTCGAGAGATGAGCTCATTC 3008226
Query 130061 GAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAG 130120
||||| || || |||||||||| ||||| || | |||||| || ||| ||||||
Sbjct 3008225 GAGAATGTAAGGCCACGCATGAGACCGCGCTTTTTGAGCCAGAAGATGGCAGCAAATGAT 3008166
Query 130121 CCAGAGAAGAAGATCCCCTCCACACACGCGAACGC 130155
|| ||||||||||| ||||||||||| || || ||
Sbjct 3008165 CCCGAGAAGAAGATGCCCTCCACACATGCAAAGGC 3008131
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618434983547680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |