Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1 183 4e-41 seq11 123 3e-23 seq3 109 6e-19 >seq1 Length=4014173 Score = 183 bits (202), Expect = 4e-41 Identities = 678/1054 (64%), Gaps = 25/1054 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| | ||||| || |||||||||| || || || |||| || ||| Sbjct 2027079 CCGCAGCACATGATTATGCGTGTTTCCATCGGTATCCACGGTGACAACATCGACAAGGTC 2027020 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| ||| || |||||| | | |||| |||||| | || ||||||||| Sbjct 2027019 ATTGAGACGTACAACCTCATGTCCGAGCGCTACTTCACTCACGCTTCCCCGACCCTCTTC 2026960 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || |||||||| || || || ||||| |||||||| |||| | ||||| ||| Sbjct 2026959 AACGCTGGTACTCCCCACCCTCAGATGTCGTCATGCTTCCTCGTCGCTATGAAGGACGAC 2026900 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || ||| |||| ||||| | || || | | || || || ||||| ||| ||||| Sbjct 2026899 TCGATCGACGGCATCTACGACACCCTCAAGACTTGCGCCCAGATCTCCAAGACTGCTGGT 2026840 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCGGGGGACAA 104519 || ||||| | ||||| || | | | |||| | ||||| ||| || || | Sbjct 2026839 GGCATTGGTCTCCACATTCACAACATTCGTGCCA--AGGGCTCGTACATTGCTGGAACCA 2026782 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| | || | ||||| | || ||||| || | | |||| || || || || | Sbjct 2026781 ACGGTTACTCCAACGGTATCGTCCCCATGCTCCGTGCCTACGACGCGACCGCCCGTTACG 2026722 Query 104580 TAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 | | || | | ||| | | | || | | || |||| |||||||| ||||| Sbjct 2026721 TTGACCAGGGT-GGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTTGAGCCCTGGCAT 2026663 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 |||||| | | || |||||||| | || ||||| || | ||||||| || Sbjct 2026662 GCGGATGTTTTCGACTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCG 2026603 Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 || ||||| |||| |||||||||| | || || |||||||||||| | || |||| Sbjct 2026602 CGTGATCTGTTCTACGCTCTCTGGGTCCCTGACCTCTTCATGAAGCGTGTCGAGGCCGAC 2026543 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA--TGCCGTGGGTG 104813 || | ||| | ||| | || || | | || |||||||| |||| | | | | | Sbjct 2026542 GGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCTGGTCTTGCCGACGTTCACTCG--G 2026485 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAG---GAAG---AAGGTCGGGCGACTGCGA 104867 || ||||||| |||| ||| ||||||||| || | | ||||| ||| | Sbjct 2026484 AGAAGTTTGAGACCCTGTACCAGAAGTACGAGCGTGAGGGCAAGGGTCGCAAGACCATCA 2026425 Query 104868 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 || |||| || | ||| || ||||| || | || |||||||||||| | Sbjct 2026424 AGG-CCCAGAAGC-----TCTGGTTTGCCATTCTTGAGGCCCAGACCGAGACTGGTGGCC 2026371 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | | ||| || ||||| || || |||| ||| ||| || || | |||| | Sbjct 2026370 CCTTCATCCTCTACAAGGATGCTGCCAACCGCAAGTCTAACCAGCAGCACCTGGGCACTA 2026311 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 ||||| ||||| ||||| || || ||| | || | | || ||| || | Sbjct 2026310 TCAAGTCGTCCAACCTCTGCACTGAGATCATCGAGTACTCTTCTCCCGACGAGGTTGCCG 2026251 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 105107 | || ||||| || || || || || ||| || ||||| |||| | || | || Sbjct 2026250 TCTGCAACCTTGCCTCCATTGCCCTTCCCGCGTTCGTGGACTTTGAGAACAGCACCTATG 2026191 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167 | | | || || ||||| | || || ||| ||||| ||||| || | || || Sbjct 2026190 ACTTCAAGAAGCTTCACGAGATCACCAAGGTTGTTACCAAGAACCTTGACTGCGTCATCT 2026131 Query 105168 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 | || | ||||||||| || || || || || ||| | || || || | | Sbjct 2026130 CGCGCAACTACTACCCCGTTCAGGAGGCCAAGAACTCGAACATGCGCCATCGCCCCGTCG 2026071 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT 105261 |||||||||| |||||||| || || | ||||| Sbjct 2026070 GTCTCGGTGTCCAGGGTCTTGCCGACGCCTTCAT 2026037 Score = 93.3 bits (102), Expect = 5e-14 Identities = 323/498 (65%), Gaps = 22/498 (4%) Strand=Plus/Minus Query 168278 CCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAAG 168337 || ||||| ||||| || | ||||| |||||||||| ||| | || || | |||| | Sbjct 1598089 CCTGTACCAATACCATCGGCGCCGTTGACGAGAACCAAGGGTACGGTAGGGAGGTAGTAC 1598030 Query 168338 TCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGGA 168397 || ||||| || | |||||| ||| | | ||| ||||| || || || || | Sbjct 1598029 TCGGGCTCGATCTGTTCACCATCTTCAACAAGATATTTGAGGATCGGGTCGTCGTCCTTG 1597970 Query 168398 TCAAAGA---------TCTTTCGGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTT 168448 | |||| || | |||| | ||||||| | |||| || |||| | Sbjct 1597969 TGGAAGAGGAGGCGAGTCATGCGGGGAATATTTGTGAAAAT-GTAACGAGCG--CTCGCT 1597913 Query 168449 TGAGACGCATCCTTACCACCCATGAGA-CGCGTACCAAACTGACCACACGGCTCAAGAAG 168507 ||||||||||| ||| ||| || |||||||||||||| ||||| || || Sbjct 1597912 ------GCATCCTTACCTCCC-TGATTGCGAGTACCAAACTGACCGTTGGGCTCGAGGAG 1597860 Query 168508 ATTGATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGA 168567 |||||| ||||| |||| ||| | ||| | || || ||| || |||| Sbjct 1597859 ATTGATGTTGTTACTGCCCACAAAGTTTTGCGCGAGACCCACGATAGTGGCCTGGAGACT 1597800 Query 168568 GACTTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTT 168627 ||| |||||||| || || ||| ||| | ||| | | || ||| || || || Sbjct 1597799 CTGTTCGCCGTGGTGATATGCTGTCTGCTCAGAAACATAACCACTCAGCTGAGCAACCTT 1597740 Query 168628 CATCTCATCCTTGAGATTCTTGTGGAA-GCATGCGTACATAACCTTGCGTTGCGAAGGCT 168686 || ||| ||| ||||| | ||| ||| | || | ||||||||||| ||||| Sbjct 1597739 CAGATCAGAGGTGATCTTCTTTTTGAAAGCAC-CATAGAGGACCTTGCGTTGACCAGGCT 1597681 Query 168687 TGAGACCATCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGA 168746 |||| |||||||| | || |||||||| | ||| |||| |||| || || Sbjct 1597680 TGAGGCCATCCGCAACCGATGGTATAGAACGGATGTTGTCAGCCATGGAGAAGAGGATGA 1597621 Query 168747 GGTCCTTGTGTACAAAGT 168764 | ||||||| || |||| Sbjct 1597620 GTTCCTTGTTCACGAAGT 1597603 >seq11 Length=562504 Score = 123 bits (136), Expect = 3e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 |||||||||||||| ||| | || || || || || |||||||| |||||||| || Sbjct 36828 TCCTTTGCTGAGCGCCTCATTGCGTTCGCCGCCGTCGAAGGTATCTTTTTCTCTGGCTCG 36887 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 || | | || | |||||||||||||| || |||||||| || ||| ||||||||| Sbjct 36888 TTTGCCTCGATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCACTTTCTCCAAC 36947 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| ||||| ||||||||||| || ||| || ||||| Sbjct 36948 GAGCTCATCTCGCGTGACGAGGGTCTTCACACCGACTTTGC 36988 >seq3 Length=3725192 Score = 109 bits (120), Expect = 6e-19 Identities = 166/231 (72%), Gaps = 9/231 (4%) Strand=Plus/Plus Query 94729 CAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG 94788 ||| |||| || ||||||| |||||| || || ||||| | |||| | || | Sbjct 3008047 CAATCAGTCCCCTGTATTCGAAAGAAGGCCGACTGGGCACTCAAGTACAT-----CACGG 3008101 Query 94789 TCG-CGTTCCTTTGCTGAGC-GACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCT 94846 || | | || || | | | |||| |||| ||||| ||||| ||||| |||||||||| Sbjct 3008102 ACGACATGCCGTTCCGCACCAGACTGATCGCCTTTGCATGTGTGGAGGGCATCTTCTTCT 3008161 Query 94847 CTGGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC 94905 | || || || ||| || || | |||||||| ||||| |||||||||| || || Sbjct 3008162 CGGGATCATT-TGCTGCCATCTTCTGGCTCAAAAAGCGCGGTCTCATGCGTGGCCTTACA 3008220 Query 94906 TTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 ||||| || ||||| |||||||| || ||||| || ||| || |||||| Sbjct 3008221 TTCTCGAATGAGCTCATCTCTCGAGATGAGGGTCTTCACACCGACTTTGCG 3008271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260595858720