Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq12 147 7e-30
seq11 141 3e-28
seq2 84.2 7e-11
>seq12
Length=418454
Score = 147 bits (162), Expect = 7e-30
Identities = 403/615 (66%), Gaps = 2/615 (0%)
Strand=Plus/Minus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
||||| || || || || ||||| | | || |||||||| | || || || || |
Sbjct 116172 CCCGAGGAGATCTCGTCCATGGTCCTCATCAAGATGAAGGAGACCGCCGAGGCCTACCTT 116113
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
|||| || || | | || || | || || || ||||| || || || | ||||||
Sbjct 116112 GGTGGCACTGTCAGCAAGGCCGTCGTCACCGTCCCCGCCTACTTCAACGACTCTCAGCGT 116053
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
|| || || || || || | ||| || || | | || || | || || || ||
Sbjct 116052 CAGGCCACCAAGGACGCCGGTACCATCGCTGGTCTTGACGTCCTCCGTATCATCAACGAG 115993
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771
||||| || || || || || || || || || || | | || || || || ||
Sbjct 115992 CCCACCGCCGCCGCTATCGCTTACGGTCTCGACAAGAAGTCCGAGGGTGAGAAGAACGTT 115933
Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831
|| ||||| || | |||||||||||||| || || || || || || |||| |||||
Sbjct 115932 CTCATTTTCGACCTTGGTGGTGGTACTTTCGACGTCTCGCTCCTTACCATTGAGGAGGGT 115873
Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891
|| || || || || || || |||||||| || || |||||||| || || ||||| ||
Sbjct 115872 ATCTTCGAGGTCAAGGCCACCGCTGGTGACACCCACCTTGGTGGTGAGGACTTTGACAAC 115813
Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAATTGATATTGGAGA 349950
|| || || || || || | || || ||||| |||| || | || |||
Sbjct 115812 CGCCTTGTCAACCACTTCGTCCAGGAGTTCAAGCG-CAAGAACAAGAAGGACATTTCTTC 115754
Query 349951 TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATC 350010
|| || | || | |||||||| | ||||| ||||| ||||||||||| || | ||
Sbjct 115753 CAACGCTCGTGCTCTCCGTCGCCTCCGCACTGCTTGTGAGCGTGCTAAGCGCACCCTTTC 115694
Query 350011 ATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTC 350070
||| | | || ||||| || || || || || || || |||| || |||| |
Sbjct 115693 GTCTGCCGCTCAGACCTCGATCGAGATCGACTCGCTCTTCGACGGCATTGACTTCTACAC 115634
Query 350071 ATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGA 350130
|| || || ||||| || || || || | || ||| || || | | || |||||
Sbjct 115633 CTCGATCACCCGTGCCCGTTTCGAGGAGCTCTGCCAGGACCTCTTCCGCTCCACTATGGA 115574
Query 350131 TCCTGTGGAAAAAGT 350145
|| || || || ||
Sbjct 115573 GCCCGTCGAGAAGGT 115559
>seq11
Length=562504
Score = 141 bits (156), Expect = 3e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| || ||||| || ||||| ||||| || || || ||
Sbjct 29283 CATACCACCACGCAGGCGGAGAACGAGGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTC 29224
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || |||||||| || || || |||||||| ||||| ||||| || ||
Sbjct 29223 CGAGAGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGG 29164
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| || || || |||||||| || || || || || || || | || || | ||
Sbjct 29163 AGGAATACCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTC 29104
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || |||| ||||| || || || || || || || ||||||||
Sbjct 29103 GACCTCGAGGGTAATGGTCTTGCCTGTGAGAGTCTTGACGAAGATCTGCAT 29053
Score = 138 bits (152), Expect = 3e-27
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || ||||||||||| || ||||| || || || || || ||
Sbjct 29055 CATACCACCACGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTC 28996
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
||| | || || || || || || || || || |||||||| ||||| ||||| || ||
Sbjct 28995 AGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGG 28936
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || || || ||||| || || | || || | |||
Sbjct 28935 CGGGATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCCGACGATTC 28876
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || |||| ||||| || || || || || || || ||||||||
Sbjct 28875 GACTTCGAGGGTAATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 28825
Score = 122 bits (134), Expect = 3e-22
Identities = 168/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||||| || ||||| | | |||||||| || | || ||||| || ||||| || |
Sbjct 29515 TTTACTCGCCTCCACGAAGACGAAGAACAAGGTGCAACGTCGACTCCTTCTGAATGTTGT 29456
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || || || || || || || || || ||||| ||||| ||||| |
Sbjct 29455 AGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGT 29396
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || ||||| || || || |||||||| || || || || || || || | || || |
Sbjct 29395 CGGGGGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACG 29336
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||||||||| || | ||||| || || || || || || |||||||||||
Sbjct 29335 ACTCAACTTCAAGAGTGATAGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 29281
Score = 109 bits (120), Expect = 2e-18
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || ||||||||||| || ||||| || || || || || ||
Sbjct 28827 CATACCACCACGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTC 28768
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || || || || || || |||||||| ||||| ||||| || ||
Sbjct 28767 CGAAAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGG 28708
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || || || || || || || | || || | ||
Sbjct 28707 CGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTC 28648
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716
||| ||||| || | || || ||||| ||
Sbjct 28647 AACCTCAAGAGTGATCGTTTTGCCGGTAAG 28618
>seq2
Length=3730214
Score = 84.2 bits (92), Expect = 7e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || || || || ||||| || || || || || ||
Sbjct 3658273 CATACCACCACGGAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 3658332
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| || || || || || || ||||| || || ||||| || ||
Sbjct 3658333 CGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGG 3658392
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || || || || || || || | || || | ||
Sbjct 3658393 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTC 3658452
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
|| || || || | ||||| || || || || || ||
Sbjct 3658453 CACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 3658491
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515253856402484
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |