Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq12 147 7e-30 seq11 141 3e-28 seq2 84.2 7e-11 >seq12 Length=418454 Score = 147 bits (162), Expect = 7e-30 Identities = 403/615 (66%), Gaps = 2/615 (0%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || || || || ||||| | | || |||||||| | || || || || | Sbjct 116172 CCCGAGGAGATCTCGTCCATGGTCCTCATCAAGATGAAGGAGACCGCCGAGGCCTACCTT 116113 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 |||| || || | | || || | || || || ||||| || || || | |||||| Sbjct 116112 GGTGGCACTGTCAGCAAGGCCGTCGTCACCGTCCCCGCCTACTTCAACGACTCTCAGCGT 116053 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || || || || | ||| || || | | || || | || || || || Sbjct 116052 CAGGCCACCAAGGACGCCGGTACCATCGCTGGTCTTGACGTCCTCCGTATCATCAACGAG 115993 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||| || || || || || || || || || || | | || || || || || Sbjct 115992 CCCACCGCCGCCGCTATCGCTTACGGTCTCGACAAGAAGTCCGAGGGTGAGAAGAACGTT 115933 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || ||||| || | |||||||||||||| || || || || || || |||| ||||| Sbjct 115932 CTCATTTTCGACCTTGGTGGTGGTACTTTCGACGTCTCGCTCCTTACCATTGAGGAGGGT 115873 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || || || |||||||| || || |||||||| || || ||||| || Sbjct 115872 ATCTTCGAGGTCAAGGCCACCGCTGGTGACACCCACCTTGGTGGTGAGGACTTTGACAAC 115813 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAATTGATATTGGAGA 349950 || || || || || || | || || ||||| |||| || | || ||| Sbjct 115812 CGCCTTGTCAACCACTTCGTCCAGGAGTTCAAGCG-CAAGAACAAGAAGGACATTTCTTC 115754 Query 349951 TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATC 350010 || || | || | |||||||| | ||||| ||||| ||||||||||| || | || Sbjct 115753 CAACGCTCGTGCTCTCCGTCGCCTCCGCACTGCTTGTGAGCGTGCTAAGCGCACCCTTTC 115694 Query 350011 ATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTC 350070 ||| | | || ||||| || || || || || || || |||| || |||| | Sbjct 115693 GTCTGCCGCTCAGACCTCGATCGAGATCGACTCGCTCTTCGACGGCATTGACTTCTACAC 115634 Query 350071 ATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGA 350130 || || || ||||| || || || || | || ||| || || | | || ||||| Sbjct 115633 CTCGATCACCCGTGCCCGTTTCGAGGAGCTCTGCCAGGACCTCTTCCGCTCCACTATGGA 115574 Query 350131 TCCTGTGGAAAAAGT 350145 || || || || || Sbjct 115573 GCCCGTCGAGAAGGT 115559 >seq11 Length=562504 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| || ||||| || ||||| ||||| || || || || Sbjct 29283 CATACCACCACGCAGGCGGAGAACGAGGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTC 29224 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || |||||||| || || || |||||||| ||||| ||||| || || Sbjct 29223 CGAGAGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGG 29164 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || |||||||| || || || || || || || | || || | || Sbjct 29163 AGGAATACCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTC 29104 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || |||| ||||| || || || || || || || |||||||| Sbjct 29103 GACCTCGAGGGTAATGGTCTTGCCTGTGAGAGTCTTGACGAAGATCTGCAT 29053 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||||||||| || ||||| || || || || || || Sbjct 29055 CATACCACCACGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTC 28996 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || || || || || || || || |||||||| ||||| ||||| || || Sbjct 28995 AGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGG 28936 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || || ||||| || || | || || | ||| Sbjct 28935 CGGGATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCCGACGATTC 28876 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || |||| ||||| || || || || || || || |||||||| Sbjct 28875 GACTTCGAGGGTAATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 28825 Score = 122 bits (134), Expect = 3e-22 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||||| || ||||| | | |||||||| || | || ||||| || ||||| || | Sbjct 29515 TTTACTCGCCTCCACGAAGACGAAGAACAAGGTGCAACGTCGACTCCTTCTGAATGTTGT 29456 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || || || || || || || ||||| ||||| ||||| | Sbjct 29455 AGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGT 29396 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || |||||||| || || || || || || || | || || | Sbjct 29395 CGGGGGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACG 29336 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||||||||| || | ||||| || || || || || || ||||||||||| Sbjct 29335 ACTCAACTTCAAGAGTGATAGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 29281 Score = 109 bits (120), Expect = 2e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||||||||| || ||||| || || || || || || Sbjct 28827 CATACCACCACGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTC 28768 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || |||||||| ||||| ||||| || || Sbjct 28767 CGAAAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGG 28708 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || || || || || || | || || | || Sbjct 28707 CGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTC 28648 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 ||| ||||| || | || || ||||| || Sbjct 28647 AACCTCAAGAGTGATCGTTTTGCCGGTAAG 28618 >seq2 Length=3730214 Score = 84.2 bits (92), Expect = 7e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 3658273 CATACCACCACGGAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 3658332 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || || || || ||||| || || ||||| || || Sbjct 3658333 CGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGG 3658392 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || || || || || || | || || | || Sbjct 3658393 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTC 3658452 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || | ||||| || || || || || || Sbjct 3658453 CACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 3658491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253856402484