Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 273 2e-68 seq3 89.7 6e-13 >seq1 Length=4014173 Score = 273 bits (302), Expect = 2e-68 Identities = 405/566 (72%), Gaps = 6/566 (1%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC-ACGCGTGTCCGTGAGACGTACGA 53253 ||||| || || | ||||||||||||||| || | || | ||| |||||||||| | Sbjct 2027064 ATGCGTGTTTCCATCGGTATCCACGGTGACAACATCGACAAG-GTCATTGAGACGTACAA 2027006 Query 53254 CTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAA 53313 | | ||| | | ||||| || ||||| | || ||||| |||||||||||||| Sbjct 2027005 CCTCATGTCCGAGCGCTACTTCACTCACGCTTCCCCGACCCTCTTCAACGCTGGTACTCC 2026946 Query 53314 TCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCAT 53373 ||||||||||||||| |||||||| || || |||||||| ||||||||||||||||| Sbjct 2026945 CCACCCTCAGATGTCGTCATGCTTCCTCGTCGCTATGAAGGACGACTCGATCGACGGCAT 2026886 Query 53374 CTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCA 53433 |||||| || |||||| || ||||| ||||||||| | ||||| || ||| |||| Sbjct 2026885 CTACGACACCCTCAAGACTTGCGCCCAGATCTCCAAGACTGCTGGTGGCATTGGTCTCCA 2026826 Query 53434 C-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | | | | ||| | ||||| || ||| | || || || ||||| | || | | Sbjct 2026825 CATTCAC-AACATTCGTGCCAAGGGCTCGTACATTGCTGGAACCAACGGTTACTCCAACG 2026767 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||||| || |||||||| | || | || || ||||| ||||| |||||||||| Sbjct 2026766 GTATCGTCCCCATGCTCCGTGCCTACGACGCGACCGCCCGTTACGTTGACCAGGGTGGCA 2026707 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 |||||| || | || ||||||||||| ||||| ||||| || || || | || | Sbjct 2026706 ACAAGCGCCCTGGTGCCTTTGCCATCTACCTTGAGCCCTGGCATGCGGATGTTTTCGACT 2026647 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACA 53671 | || || || || ||| || || | || ||| | ||| ||||| ||||| ||| Sbjct 2026646 TCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCGCGTGATCTGTTCTAC- 2026588 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 ||||| ||| | || |||||||||||| | || ||| |||| || ||| ||| Sbjct 2026587 GCTCTCTGGGTCCCTGACCTCTTCATGAAGCGTGTCGAGGCCGACGGTGACTGGACCCTC 2026528 Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCT 53757 |||||||| ||||||||| || || Sbjct 2026527 ATGTGCCCCGCCGAGTGCCCTGGTCT 2026502 Score = 145 bits (160), Expect = 8e-30 Identities = 212/297 (71%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||| || |||||||| || || | || ||||| || || Sbjct 1597936 GTGAAAATGTAACGAGCGCTCGCTGCATCCTTACCTCCCTGATTGCGAGTACCAAACTGA 1597877 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | ||||| | ||| || | |||||| ||||||||||||||| || | || Sbjct 1597876 CCGTTGGGCTCGAGGAGATTGATGTTGTTACTGCCCACAAAGTTTTGCGCGAGACCCACG 1597817 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || | ||||| ||| || || |||||||| || |||||||| | || || || Sbjct 1597816 ATAGTGGCCTGGAGACTCTGTTCGCCGTGGTGATATGCTGTCTGCTCAGAAACATAACCA 1597757 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTG-AGGCAGGCATAAATCAC 117543 ||||||||| ||||||| || || || | ||||| ||| | ||| |||| | || Sbjct 1597756 CTCAGCTGAGCAACCTTCAGATCAGAGGTGATCTTCTTTTTGAAAGCA-CCATAGAGGAC 1597698 Query 117544 CTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600 |||||| |||| ||||| || |||||||| || || || ||||| || |||| Sbjct 1597697 CTTGCGTTGACCAGGCTTGAGGCCATCCGCAACCGATGGTATAGAACGGATGTTGTC 1597641 Score = 136 bits (150), Expect = 4e-27 Identities = 258/377 (68%), Gaps = 2/377 (1%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| || || || || |||||||| |||| || || || ||||| ||| || Sbjct 1598089 CCTGTACCAATACCATCGGCGCCGTTGACGAGAACCAAGGGTACGGTAGGGAGGTAGTAC 1598030 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 || ||||| | ||||| ||| || || | | ||||| | | | | ||| || Sbjct 1598029 TCGGGCTCGATCTGTTCACCATCTTCAACAAGATATTTGAGGATCGGGTCGTCGTCCTTG 1597970 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | ||| | | |||||||| | | | ||||| ||||| || | ||| || ||| Sbjct 1597969 TGGAAGAGGAGGCGAGTCATGCGGGGAATATTTGTGAAAATGTAACGAGCGCTCGCTGCA 1597910 Query 152056 TCCTTGCCACC-TGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114 ||||| || || || || | || |||||||| || |||||||||||| |||| ||| Sbjct 1597909 TCCTTACCTCCCTGATTGC-GAGTACCAAACTGACCGTTGGGCTCGAGGAGATTGATGTT 1597851 Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACC 152174 ||| |||||| || || || || | | ||| || ||| |||| |||||| ||| || Sbjct 1597850 GTTACTGCCCACAAAGTTTTGCGCGAGACCCACGATAGTGGCCTGGAGACTCTGTTCGCC 1597791 Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGT 152234 ||||||||| || |||||||| | | || || || ||| || ||||||| || | Sbjct 1597790 GTGGTGATATGCTGTCTGCTCAGAAACATAACCACTCAGCTGAGCAACCTTCAGATCAGA 1597731 Query 152235 CGTCAGGTTCTTCTTGA 152251 || | ||||| |||| Sbjct 1597730 GGTGATCTTCTTTTTGA 1597714 Score = 111 bits (122), Expect = 2e-19 Identities = 555/868 (64%), Gaps = 32/868 (4%) Strand=Plus/Minus Query 55096 TGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCAT 55155 |||||| | ||||||||||| | || ||||| || |||||| || | ||||| Sbjct 2026192 TGACTTCAAGAAGCTTCACGAGATCACCAAGGTTGTTACCAAGAACCTTGACTGCGTCAT 2026133 Query 55156 CGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCAT 55215 | || |||||||| | | | ||| || || ||| | || || || ||| | Sbjct 2026132 CTCGCGCAACTACTACCCCGTTCAGGAGGCCAAGAACTCGAACATGCGCCATCGCCCCGT 2026073 Query 55216 CGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTC 55275 || ||||||| ||||| | |||||| ||||||| ||| | ||||||||||||| Sbjct 2026072 CGGTCTCGGTGTCCAGGGTCTTGCCGACGCCTTCATGGCCCTCCGCATGCCCTTCGACTC 2026013 Query 55276 GGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTCG 55334 | | ||||| | | |||| | |||||| || | ||||||| || || |||| Sbjct 2026012 GCCTGCCGCTCGCCAGCTCAACCTCCAGATCTTCGAGAC-CATCTACCACGCTGCTCTCG 2025954 Query 55335 AGGAGTCGTGTCATCTGG-CTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCG-CC 55392 ||| ||||||| | ||| | | ||| | || |||||| | | | | |||| || Sbjct 2025953 AGGCGTCGTGTGAGATGGCCCAGGAG-GTTGGAACCTACCCTTCATACGAGGGTTCGCCC 2025895 Query 55393 AGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAGT-------CTGACCCC---A 55442 | || | |||| |||||||| || || |||||| || | |||| | | Sbjct 2025894 ATCTCGC-AGGGCAAGCTCCAGTTTGACCTTTGGGGC-CGTATCCCCACCGACCTCTGGA 2025837 Query 55443 TGTTTGACAAGTTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGG 55502 | ||| || | | | || | | ||| | |||||||| || ||||| | Sbjct 2025836 ACTGGGACGAGCTCCGTGAGAAGATCGCCAAGAACGGCGTTCGCAACTCGCTTCTCGTCG 2025777 Query 55503 CGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGT 55562 | || ||||| || || || || ||||||| | ||| |||||| |||||||| | Sbjct 2025776 CCCCCATGCCTACTGCTTCCACTTCTCAGATTCTTGGCTGGAACGAGTGCTTCGAGCCTT 2025717 Query 55563 ACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTT---TGTCATGATCAACA 55619 |||| | | ||||| ||||| || | ||||| || ||| | | | Sbjct 2025716 ACACCTCGATGCTCTACTCCCGCCGTGTGCTCTCTGGTGACTTCCAGGTCGTCTGCCCCT 2025657 Query 55620 AGCACC-TCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGATCAAGACGGAT 55678 || || |||| ||||| || || || ||| || | || ||| | | | Sbjct 2025656 GGCTCCTTCGT----GACCTCATCAACCTCGACCTCTGGGACGACAACATGAAG-CAGCT 2025602 Query 55679 ATTGTGCGGAACGGGGGGTCCG-TCCAGAA----TCTGGAGATTCCTCTGCGTCTCAAGG 55733 | || |||| ||| || ||||| | ||||| | || || | ||||| Sbjct 2025601 CGTCATCGCCTCGGGTGGTTCGATCCAGCACATTCCTGGAATTCCCGATGAG-ATCAAGT 2025543 Query 55734 AGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATC 55793 ||| ||| ||| || ||||||||| | |||||| | || ||| | || || | Sbjct 2025542 CGATCTACAAGACTGTCTGGGAGATTTCGCAGAAGGCAGTTATCGACCTTGCCGCCGACC 2025483 Query 55794 GTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGG 55853 ||||||| | ||||||||||| ||||| || |||||| | || ||| ||||| | Sbjct 2025482 GTGGTGCTTTTATCGACCAGTCGCAGTCGCTCAACATCCACCTGTCGAACCCTTCGTTCT 2025423 Query 55854 CCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACT 55913 | || | | || |||||||||||||| |||||| || || ||||| || ||||||| Sbjct 2025422 CTCAGCTCACTTCCATGCACTTTTACGGCTGGAAGCGTGGTCTTAAGACCGGCATGTACT 2025363 Query 55914 ATCTGCGGACCCGCGCCAAGGCCAAGGC 55941 | || || |||||| | |||||| || Sbjct 2025362 ACCTTCGTACCCGCCCGTCGGCCAACGC 2025335 >seq3 Length=3725192 Score = 89.7 bits (98), Expect = 6e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 |||||||| || | ||||||| |||| || || ||||| || | ||| ||||||||| Sbjct 3008231 TCATTCGAGAATGTAAGGCCACGCATGAGACCGCGCTTTTTGAGCCAGAAGATGGCAGCA 3008172 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGC-GTTGCGCGAA 74908 || || || |||||||||||| || ||||| |||||||||| || | | |||| ||| Sbjct 3008171 AATGATCCCGAGAAGAAGATGCCCTCCACACATGCAAAGGCGATCAGTCTGGTGCG-GAA 3008113 Query 74909 CGG 74911 ||| Sbjct 3008112 CGG 3008110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215808474400