Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 336 2e-87 seq11 185 1e-41 seq2 145 9e-30 >seq1 Length=4014173 Score = 336 bits (372), Expect = 2e-87 Identities = 712/1049 (68%), Gaps = 19/1049 (2%) Strand=Plus/Plus Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774 |||||| |||| || || ||||| || |||| ||| ||||| |||||| ||||||| Sbjct 2026036 CATGAAGGCGTCGGCAAGACCCTGGACACCGAGACCGACGGGGCGATGGCGCATGTTCGA 2026095 Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834 || ||||||| ||| ||||| |||| |||||||| || ||||| || Sbjct 2026096 GTTCTTGGCCTCCTGAACGGGGTAGTAGTTGCGCGAGATGACGCAGTCAAGGTTCTTGGT 2026155 Query 80835 AACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT-TG--GTTCCCC---TTCAC 80888 ||||||| || | || ||||| |||| ||||| | || |||| | | ||| Sbjct 2026156 AACAACCTTGGTGATCTCGTGAAGCTTCTTGAAGTCATAGGTGCTGTTCTCAAAGTCCAC 2026215 Query 80889 AAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAA 80948 || || |||||| | ||| || || ||||| ||||| ||||| || | | | | Sbjct 2026216 GAACGCGGGAAGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTA 2026275 Query 80949 CTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGA 81008 ||||| ||| || ||||| | || || ||||| || || ||||||| | |||||| || Sbjct 2026276 CTCGATGATCTCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTAGA 2026335 Query 81009 CTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTT 81068 |||| |||| ||| ||||||||| ||| | ||| ||| |||||| ||| | || Sbjct 2026336 CTTGCGGTTGGCAGCATCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCTC 2026395 Query 81069 GAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCAC 81128 || ||||| ||| | || | ||||||| |||||| ||||| || | | Sbjct 2026396 AAGAATGGCAAACCAGAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCACGCTC 2026455 Query 81129 ATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACT 81187 ||||| ||| || || || ||||| | ||||| || | || | ||||||| Sbjct 2026456 GTACTTCTGGTACAGGGTC-TCAAACTTCTCCGAGTGAACGTCGGCAAGACCAGGGCACT 2026514 Query 81188 CGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAG 81247 || |||||||| ||| |||||| |||| ||| ||| ||||||||| ||||| Sbjct 2026515 CGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAG 2026574 Query 81248 GGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGC 81307 ||| |||||| ||| |||||| || || ||| ||||||| | || ||||| || Sbjct 2026575 GGACCCAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTGC 2026634 Query 81308 GCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACC 81367 | | || || ||||| | | ||||||||||| ||||| || || | ||| | | | Sbjct 2026635 GGAGGTCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCAC 2026694 Query 81368 CCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACA 81424 | ||| | |||||||||| ||||||||||| ||||||| | |||| | || Sbjct 2026695 CAGGGCGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCA 2026754 Query 81425 TAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA 81484 | |||| |||||| | || | |||||| || || | || ||| |||||||| || | Sbjct 2026755 TGGGGACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAGCCCTTGGCACGAA 2026814 Query 81485 CCTTGCTGATTG-AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTC 81543 ||| ||| || ||||| |||||||| | ||| || ||||| || || || Sbjct 2026815 TGTTG-TGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAAGTCTTG 2026873 Query 81544 ATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGAC 81603 | ||| || || || || ||||| || | ||||| | | | ||| || ||| Sbjct 2026874 AGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCATGACGAC 2026933 Query 81604 ATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC 81661 ||||||||| | ||| || || ||||| || || |||| |||||| |||| || | Sbjct 2026934 ATCTGAGGG--TGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGC 2026991 Query 81662 GGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTG-GAATATCGTCACCGTGAATACCG 81720 | | ||||| |||| || || || |||| | || || | ||||||||| |||||| Sbjct 2026992 GCTCGGACATGAGGTTGTACGTCTCAATGAC-CTTGTCGATGTTGTCACCGTGGATACCG 2027050 Query 81721 ATAGCTACACGCATAAACATGTACTGGGG 81749 || | |||||||||| ||||| ||| || Sbjct 2027051 ATGGAAACACGCATAATCATGTGCTGCGG 2027079 Score = 111 bits (122), Expect = 2e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 || ||||| || ||||||||||| || || || ||||| ||||| || | || | Sbjct 637070 GTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGATCGAC 637129 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||||| || || |||||||||||||| || || || |||||||||||||| || Sbjct 637130 AACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTTATC 637189 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 || || || ||||| |||||||| | || ||||| | ||||| Sbjct 637190 TTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTA 637233 Score = 107 bits (118), Expect = 2e-18 Identities = 189/273 (69%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 31978 GTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCT-CAAGAAGAA 32036 || ||||| |||||||||||| || |||||||| | || | ||| | ||| ||||| Sbjct 1597665 GTTGCGGATGGCCTCAAGCCTGGTCAACGCAAGGTCCTCTATGG-TGCTTTCAAAAAGAA 1597723 Query 32037 CCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTA 32096 | | ||| ||||||| || |||||| || || || | ||||| || || || Sbjct 1597724 GATCACCTCTGATCTGAAGGTTGCTCAGCTGAGTGGTTATGTTTCTGAGCAGACAGCATA 1597783 Query 32097 TCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGG 32156 |||||||||||| | ||||||| ||| || || || || || |||||||| || Sbjct 1597784 TCACCACGGCGAACAGAGTCTCCAGGCCACTATCGTGGGTCTCGCGCAAAACTTTGTGGG 1597843 Query 32157 TGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGG 32216 || ||| | || | |||||||| || |||||||| || || || || Sbjct 1597844 CAGTAACAACATCAATCTCCTCGAGCCCAACGGTCAGTTTGGTACTCGCAATCAGGGAGG 1597903 Query 32217 CAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 |||||||| |||||| | |||||||| ||||| Sbjct 1597904 TAAGGATGCAGCGAGCGCTCGTTACATTTTCAC 1597936 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 80005 ACCGTCACCTGAATTGGCTTGGCCTTTGCCCGCGTCCGCAGATAGTACATGCCCGTCTTG 80064 || || | |||||| | |||||| | || || || || ||||||||||| ||||| Sbjct 2025320 ACGGTGAACTGAATGGCGTTGGCCGACGGGCGGGTACGAAGGTAGTACATGCCGGTCTTA 2025379 Query 80065 AGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCC 80124 || || |||||||||||| | |||||| ||| |||||| | | | |||||| | Sbjct 2025380 AGACCACGCTTCCAGCCGTAAAAGTGCATGGAAGTGAGCTGAGAGAACGAAGGGTTCGAC 2025439 Query 80125 ATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCA 80184 | | |||||| || ||||| ||||| ||| ||||| ||||| || || || | || Sbjct 2025440 AGGTGGATGTTGAGCGACTGCGACTGGTCGATAAAAGCACCACGGTCGGCGGCAAGGTCG 2025499 Query 80185 ATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 |||| || ||| || | ||| ||||| || || Sbjct 2025500 ATAACTGCCTTCTGCGAAATCTCCCAGACAGT 2025531 >seq11 Length=562504 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| ||||| || ||||| ||||| Sbjct 29053 ATGCAGATCTTCGTCAAGACTCTCACAGGCAAGACCATTACCCTCGAGGTCGAGTCGTCC 29112 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || ||||||||||||||||| |||||||| |||||| Sbjct 29113 GACACTATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAG 29172 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| || || || | ||||||||| | ||||| || Sbjct 29173 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGACGGTCGTACCCTCTCGGACTACAAC 29232 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||| ||||| || || | || || || ||||| Sbjct 29233 ATCCAAAAGGAGTCCACACTTCACCTCGTTCTCCGCCTGCGTGGTGG 29279 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| ||||| || || || || || Sbjct 28825 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACCCTCGAAGTCGAATCGTCG 28884 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| || || |||||||||||||| || || || |||||| Sbjct 28885 GACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAG 28944 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| |||||||| | |||||||| | ||||| || Sbjct 28945 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCTGACTACAAC 29004 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || |||||||| ||| | ||||| || ||||| Sbjct 29005 ATCCAGAAGGAGTCGACCCTTCATCTTGTCCTCCGTCTCCGTGGTGG 29051 Score = 176 bits (194), Expect = 5e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| ||||| |||||||| || || |||||||| ||||| || | ||| | Sbjct 28328 GTCAAGACTCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCTTCGGACACCATCGAC 28387 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||||| || ||||||||||||||||| || || || |||||||||||||| || Sbjct 28388 AACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCATC 28447 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 ||||| || ||||| |||||||| | ||||||||| | || || || |||| ||||| Sbjct 28448 TTTGCCGGAAAGCAGCTCGAGGACGGTCGTACCCTCTCGGATTACAACATCCAGAAGGAG 28507 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || |||||||| || | ||||| |||||||| Sbjct 28508 TCGACCCTTCATCTCGTTCTCCGTCTCCGCGGTGG 28542 Score = 174 bits (192), Expect = 2e-38 Identities = 162/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||||||||| || || ||||||||||||||||| || | ||| | || | ||| Sbjct 28618 CTTACCGGCAAAACGATCACTCTTGAGGTTGAGTCTTCGGACACCATCGACAACGTCAAG 28677 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || |||||||||||||| || || || |||||||||||||| || ||||| || Sbjct 28678 GCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCATCTTTGCCGGC 28737 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| |||||||| | ||||||||| | ||||| || |||| ||||| || || ||| Sbjct 28738 AAGCAGCTCGAGGACGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTT 28797 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| ||| | ||||| || ||||| Sbjct 28798 CATCTTGTCCTCCGTCTCCGTGGTGG 28823 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || ||||||||||| |||||||| |||||||| Sbjct 29281 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACTATCACTCTTGAAGTTGAGTCGTCC 29340 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || ||||||||||||||||| ||||| || |||||| Sbjct 29341 GACACTATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 29400 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| |||||||| | || || || | ||||| || Sbjct 29401 CAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAAC 29460 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || | || || || | |||||||| || || Sbjct 29461 ATTCAGAAGGAGTCGACGTTGCACCTTGTTCTTCGTCTTCGTGGAGG 29507 >seq2 Length=3730214 Score = 145 bits (160), Expect = 9e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || ||||||||||| || || ||||| ||||| || | ||| | Sbjct 3658491 GTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATCGAC 3658432 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||||| || || |||||||||||||| || || || ||||||||||| || || Sbjct 3658431 AACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCATC 3658372 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| |||||||||| || ||||| | ||||| || |||| ||||| Sbjct 3658371 TTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAG 3658312 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || || ||| | || || || ||||| Sbjct 3658311 TCGACCCTCCACCTCGTCCTCCGCCTCCGTGGTGG 3658277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310200391360