Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq1 336 2e-87
seq11 185 1e-41
seq2 145 9e-30
>seq1
Length=4014173
Score = 336 bits (372), Expect = 2e-87
Identities = 712/1049 (68%), Gaps = 19/1049 (2%)
Strand=Plus/Plus
Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774
|||||| |||| || || ||||| || |||| ||| ||||| |||||| |||||||
Sbjct 2026036 CATGAAGGCGTCGGCAAGACCCTGGACACCGAGACCGACGGGGCGATGGCGCATGTTCGA 2026095
Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834
|| ||||||| ||| ||||| |||| |||||||| || ||||| ||
Sbjct 2026096 GTTCTTGGCCTCCTGAACGGGGTAGTAGTTGCGCGAGATGACGCAGTCAAGGTTCTTGGT 2026155
Query 80835 AACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT-TG--GTTCCCC---TTCAC 80888
||||||| || | || ||||| |||| ||||| | || |||| | | |||
Sbjct 2026156 AACAACCTTGGTGATCTCGTGAAGCTTCTTGAAGTCATAGGTGCTGTTCTCAAAGTCCAC 2026215
Query 80889 AAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAA 80948
|| || |||||| | ||| || || ||||| ||||| ||||| || | | | |
Sbjct 2026216 GAACGCGGGAAGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTA 2026275
Query 80949 CTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGA 81008
||||| ||| || ||||| | || || ||||| || || ||||||| | |||||| ||
Sbjct 2026276 CTCGATGATCTCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTAGA 2026335
Query 81009 CTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTT 81068
|||| |||| ||| ||||||||| ||| | ||| ||| |||||| ||| | ||
Sbjct 2026336 CTTGCGGTTGGCAGCATCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCTC 2026395
Query 81069 GAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCAC 81128
|| ||||| ||| | || | ||||||| |||||| ||||| || | |
Sbjct 2026396 AAGAATGGCAAACCAGAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCACGCTC 2026455
Query 81129 ATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACT 81187
||||| ||| || || || ||||| | ||||| || | || | |||||||
Sbjct 2026456 GTACTTCTGGTACAGGGTC-TCAAACTTCTCCGAGTGAACGTCGGCAAGACCAGGGCACT 2026514
Query 81188 CGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAG 81247
|| |||||||| ||| |||||| |||| ||| ||| ||||||||| |||||
Sbjct 2026515 CGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAG 2026574
Query 81248 GGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGC 81307
||| |||||| ||| |||||| || || ||| ||||||| | || ||||| ||
Sbjct 2026575 GGACCCAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTGC 2026634
Query 81308 GCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACC 81367
| | || || ||||| | | ||||||||||| ||||| || || | ||| | | |
Sbjct 2026635 GGAGGTCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCAC 2026694
Query 81368 CCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACA 81424
| ||| | |||||||||| ||||||||||| ||||||| | |||| | ||
Sbjct 2026695 CAGGGCGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCA 2026754
Query 81425 TAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA 81484
| |||| |||||| | || | |||||| || || | || ||| |||||||| || |
Sbjct 2026755 TGGGGACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAGCCCTTGGCACGAA 2026814
Query 81485 CCTTGCTGATTG-AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTC 81543
||| ||| || ||||| |||||||| | ||| || ||||| || || ||
Sbjct 2026815 TGTTG-TGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAAGTCTTG 2026873
Query 81544 ATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGAC 81603
| ||| || || || || ||||| || | ||||| | | | ||| || |||
Sbjct 2026874 AGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCATGACGAC 2026933
Query 81604 ATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC 81661
||||||||| | ||| || || ||||| || || |||| |||||| |||| || |
Sbjct 2026934 ATCTGAGGG--TGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGC 2026991
Query 81662 GGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTG-GAATATCGTCACCGTGAATACCG 81720
| | ||||| |||| || || || |||| | || || | ||||||||| ||||||
Sbjct 2026992 GCTCGGACATGAGGTTGTACGTCTCAATGAC-CTTGTCGATGTTGTCACCGTGGATACCG 2027050
Query 81721 ATAGCTACACGCATAAACATGTACTGGGG 81749
|| | |||||||||| ||||| ||| ||
Sbjct 2027051 ATGGAAACACGCATAATCATGTGCTGCGG 2027079
Score = 111 bits (122), Expect = 2e-19
Identities = 123/164 (75%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|| ||||| || ||||||||||| || || || ||||| ||||| || | || |
Sbjct 637070 GTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGATCGAC 637129
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
|| | ||||| || || |||||||||||||| || || || |||||||||||||| ||
Sbjct 637130 AACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTTATC 637189
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581
|| || || ||||| |||||||| | || ||||| | |||||
Sbjct 637190 TTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTA 637233
Score = 107 bits (118), Expect = 2e-18
Identities = 189/273 (69%), Gaps = 2/273 (1%)
Strand=Plus/Plus
Query 31978 GTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCT-CAAGAAGAA 32036
|| ||||| |||||||||||| || |||||||| | || | ||| | ||| |||||
Sbjct 1597665 GTTGCGGATGGCCTCAAGCCTGGTCAACGCAAGGTCCTCTATGG-TGCTTTCAAAAAGAA 1597723
Query 32037 CCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTA 32096
| | ||| ||||||| || |||||| || || || | ||||| || || ||
Sbjct 1597724 GATCACCTCTGATCTGAAGGTTGCTCAGCTGAGTGGTTATGTTTCTGAGCAGACAGCATA 1597783
Query 32097 TCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGG 32156
|||||||||||| | ||||||| ||| || || || || || |||||||| ||
Sbjct 1597784 TCACCACGGCGAACAGAGTCTCCAGGCCACTATCGTGGGTCTCGCGCAAAACTTTGTGGG 1597843
Query 32157 TGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGG 32216
|| ||| | || | |||||||| || |||||||| || || || ||
Sbjct 1597844 CAGTAACAACATCAATCTCCTCGAGCCCAACGGTCAGTTTGGTACTCGCAATCAGGGAGG 1597903
Query 32217 CAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249
|||||||| |||||| | |||||||| |||||
Sbjct 1597904 TAAGGATGCAGCGAGCGCTCGTTACATTTTCAC 1597936
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 80005 ACCGTCACCTGAATTGGCTTGGCCTTTGCCCGCGTCCGCAGATAGTACATGCCCGTCTTG 80064
|| || | |||||| | |||||| | || || || || ||||||||||| |||||
Sbjct 2025320 ACGGTGAACTGAATGGCGTTGGCCGACGGGCGGGTACGAAGGTAGTACATGCCGGTCTTA 2025379
Query 80065 AGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCC 80124
|| || |||||||||||| | |||||| ||| |||||| | | | |||||| |
Sbjct 2025380 AGACCACGCTTCCAGCCGTAAAAGTGCATGGAAGTGAGCTGAGAGAACGAAGGGTTCGAC 2025439
Query 80125 ATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCA 80184
| | |||||| || ||||| ||||| ||| ||||| ||||| || || || | ||
Sbjct 2025440 AGGTGGATGTTGAGCGACTGCGACTGGTCGATAAAAGCACCACGGTCGGCGGCAAGGTCG 2025499
Query 80185 ATAATTGACTTTTGTGGAATTTCCCATACTGT 80216
|||| || ||| || | ||| ||||| || ||
Sbjct 2025500 ATAACTGCCTTCTGCGAAATCTCCCAGACAGT 2025531
>seq11
Length=562504
Score = 185 bits (204), Expect = 1e-41
Identities = 177/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || || |||||||| ||||| || ||||| |||||
Sbjct 29053 ATGCAGATCTTCGTCAAGACTCTCACAGGCAAGACCATTACCCTCGAGGTCGAGTCGTCC 29112
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || ||||||| || ||||||||||||||||| |||||||| ||||||
Sbjct 29113 GACACTATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAG 29172
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || ||||| || ||||| || || || | ||||||||| | ||||| ||
Sbjct 29173 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGACGGTCGTACCCTCTCGGACTACAAC 29232
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| ||||| ||||| || || | || || || |||||
Sbjct 29233 ATCCAAAAGGAGTCCACACTTCACCTCGTTCTCCGCCTGCGTGGTGG 29279
Score = 179 bits (198), Expect = 4e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || || |||||||| ||||| || || || || ||
Sbjct 28825 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACCCTCGAAGTCGAATCGTCG 28884
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| ||||||| || || |||||||||||||| || || || ||||||
Sbjct 28885 GACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAG 28944
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || ||||| || ||||| |||||||| | |||||||| | ||||| ||
Sbjct 28945 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCTGACTACAAC 29004
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || |||||||| ||| | ||||| || |||||
Sbjct 29005 ATCCAGAAGGAGTCGACCCTTCATCTTGTCCTCCGTCTCCGTGGTGG 29051
Score = 176 bits (194), Expect = 5e-39
Identities = 168/215 (78%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| ||||| |||||||| || || |||||||| ||||| || | ||| |
Sbjct 28328 GTCAAGACTCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCTTCGGACACCATCGAC 28387
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
|| | ||||| || ||||||||||||||||| || || || |||||||||||||| ||
Sbjct 28388 AACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCATC 28447
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
||||| || ||||| |||||||| | ||||||||| | || || || |||| |||||
Sbjct 28448 TTTGCCGGAAAGCAGCTCGAGGACGGTCGTACCCTCTCGGATTACAACATCCAGAAGGAG 28507
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || |||||||| || | ||||| ||||||||
Sbjct 28508 TCGACCCTTCATCTCGTTCTCCGTCTCCGCGGTGG 28542
Score = 174 bits (192), Expect = 2e-38
Identities = 162/206 (79%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486
||||||||||| || || ||||||||||||||||| || | ||| | || | |||
Sbjct 28618 CTTACCGGCAAAACGATCACTCTTGAGGTTGAGTCTTCGGACACCATCGACAACGTCAAG 28677
Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546
|| || || |||||||||||||| || || || |||||||||||||| || ||||| ||
Sbjct 28678 GCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCATCTTTGCCGGC 28737
Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606
||||| |||||||| | ||||||||| | ||||| || |||| ||||| || || |||
Sbjct 28738 AAGCAGCTCGAGGACGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTT 28797
Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||| ||| | ||||| || |||||
Sbjct 28798 CATCTTGTCCTCCGTCTCCGTGGTGG 28823
Score = 158 bits (174), Expect = 1e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || ||||||||||| |||||||| ||||||||
Sbjct 29281 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACTATCACTCTTGAAGTTGAGTCGTCC 29340
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || ||||||| || ||||||||||||||||| ||||| || ||||||
Sbjct 29341 GACACTATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 29400
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || || || ||||| |||||||| | || || || | ||||| ||
Sbjct 29401 CAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAAC 29460
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| || || | || || || | |||||||| || ||
Sbjct 29461 ATTCAGAAGGAGTCGACGTTGCACCTTGTTCTTCGTCTTCGTGGAGG 29507
>seq2
Length=3730214
Score = 145 bits (160), Expect = 9e-30
Identities = 161/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || || ||||||||||| || || ||||| ||||| || | ||| |
Sbjct 3658491 GTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATCGAC 3658432
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
|| | ||||| || || |||||||||||||| || || || ||||||||||| || ||
Sbjct 3658431 AACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCATC 3658372
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|| || || ||||| |||||||||| || ||||| | ||||| || |||| |||||
Sbjct 3658371 TTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAG 3658312
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || || || || ||| | || || || |||||
Sbjct 3658311 TCGACCCTCCACCTCGTCCTCCGCCTCCGTGGTGG 3658277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310200391360
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