Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq11 179 9e-40
seq2 176 1e-38
seq1 134 3e-26
>seq11
Length=562504
Score = 179 bits (198), Expect = 9e-40
Identities = 167/212 (79%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || |||||||| |||||||| ||||||||||| || |||| ||||| | || |||
Sbjct 29264 AGAACGAGGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTACGACCGTCT 29205
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| || || || ||||| ||||||| || |||||||||
Sbjct 29204 TCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCC 29145
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| |||||||| ||||| ||||| || || |||||||| || || |||
Sbjct 29144 TGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCGACCTCGAGGGTAATGGTC 29085
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||||||||| || || | ||||||
Sbjct 29084 TTGCCTGTGAGAGTCTTGACGAAGATCTGCAT 29053
Score = 161 bits (178), Expect = 2e-34
Identities = 163/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| ||||| || ||||| || |||||||| || || | ||||| | || ||
Sbjct 29036 AGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCGTCC 28977
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| || || || ||||| || || | || |||||||||
Sbjct 28976 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCC 28917
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || ||||||||||| || ||| || ||||| || || |||
Sbjct 28916 TGGATCTTGGCCTTCACATTGTCGATGGTGTCCGACGATTCGACTTCGAGGGTAATGGTC 28857
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||||||||| || || | ||||||
Sbjct 28856 TTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 28825
Score = 158 bits (174), Expect = 3e-33
Identities = 170/225 (76%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| |||||| | || |||||||| | || ||||| || || ||||| || || | |||
Sbjct 29505 TCCACGAAGACGAAGAACAAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGAAAG 29446
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|| | || || || ||||||||||| |||||||| || || || ||||| || ||||
Sbjct 29445 AGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGGGAAT 29386
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|| ||||||||||| ||||| |||||||| ||||| ||||| || ||||| ||
Sbjct 29385 GCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCAACTTC 29326
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||||||| ||||| || ||||| ||||| || || | ||||||
Sbjct 29325 AAGAGTGATAGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 29281
Score = 156 bits (172), Expect = 1e-32
Identities = 149/191 (78%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| ||||| || ||||| || |||||||| || |||| |||||| | || ||
Sbjct 28808 AGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCGTCC 28749
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| || || || ||||| || || | || |||||||||
Sbjct 28748 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 28689
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| ||||||||||| || |||||||| |||||||||||
Sbjct 28688 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCAACCTCAAGAGTGATCGTT 28629
Query 211083 TTTCCCGTGAG 211093
|| || || ||
Sbjct 28628 TTGCCGGTAAG 28618
Score = 145 bits (160), Expect = 2e-29
Identities = 152/200 (76%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || || ||||| || ||||| || |||||||| ||||||| ||||| | || ||
Sbjct 28527 AGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTACGACCGTCC 28468
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || || ||||| || || || ||||| || || | || |||||||||
Sbjct 28467 TCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 28408
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || ||||| ||||||||||| || || ||||| || ||||| |||
Sbjct 28407 TGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTC 28348
Query 211083 TTTCCCGTGAGAGTCTTTAC 211102
|| ||||| |||||||| ||
Sbjct 28347 TTGCCCGTAAGAGTCTTGAC 28328
>seq2
Length=3730214
Score = 176 bits (194), Expect = 1e-38
Identities = 159/200 (80%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || || ||||| || |||||||| || |||| |||||| | |||||
Sbjct 3658292 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCC 3658351
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| ||||| || ||||| || || | || |||||||||
Sbjct 3658352 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 3658411
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| ||||||||||| || || |||||||| ||||| |||
Sbjct 3658412 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTC 3658471
Query 211083 TTTCCCGTGAGAGTCTTTAC 211102
|| |||||||| ||||| ||
Sbjct 3658472 TTGCCCGTGAGGGTCTTGAC 3658491
>seq1
Length=4014173
Score = 134 bits (148), Expect = 3e-26
Identities = 128/164 (78%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998
|| |||| |||||| | || || || ||||||||||| ||||||||||| || || |||
Sbjct 637233 TAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGG 637174
Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058
||||| || | || ||||||||||||||||| || ||||| ||||| ||||| ||
Sbjct 637173 TCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCCGAC 637114
Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
|| |||||||| ||||| ||||| || ||||| ||||| ||
Sbjct 637113 GACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAAC 637070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159151584154220
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |