Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq11 93.3 4e-14
>seq11
Length=562504
Score = 93.3 bits (102), Expect = 4e-14
Identities = 138/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152
||| || || || || || |||| ||| || || |||| || ||||| |||||||| ||
Sbjct 29472 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 29413
Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212
|| |||||||||||||||| ||| | || ||| |||||| || ||| || | |||
Sbjct 29412 GATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCA-CGT 29354
Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271
| | | || ||| |||||| || || | |||||| | || || || || || || |
Sbjct 29353 TGTCGATAGTGTCGGACGACTCAACTTCAAGAGTGATAGTCTTGCCAGTGAGGGTCTTGA 29294
Query 39272 CAAAGATTTGCAT 39284
| || || |||||
Sbjct 29293 CGAAAATCTGCAT 29281
Score = 82.4 bits (90), Expect = 7e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|| || ||| ||| ||||| || || || || | || || || |||| ||||||||
Sbjct 29255 TGAAGTGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTACGACCGTCTTCAAGCTGC 29196
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
||||| ||||| || |||||||||||||||| || | | ||| |||||| || |||
Sbjct 29195 TTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTC 29136
Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260
|| | ||| | | | || ||| |||||| || || | || || | || || ||
Sbjct 29135 GCCTTCA-CGTTGTCGATAGTGTCGGACGACTCGACCTCGAGGGTAATGGTCTTGCCTGT 29077
Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284
|| || || || ||||| |||||
Sbjct 29076 GAGAGTCTTGACGAAGATCTGCAT 29053
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429545453417564
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |