Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq11 109 4e-19 >seq11 Length=562504 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || || || |||||||| |||||||| || | Sbjct 29281 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACTATCACTCTTGAAGTTGAGTCGTCC 29340 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || || ||| ||||| || || | || || || || Sbjct 29341 GACACTATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 29400 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || || || |||| |||||| | ||| |||||| Sbjct 29401 CAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAAC 29460 Query 23791 ATACAAAAAGAGTCCACATTACA 23813 || || || ||||| || || || Sbjct 29461 ATTCAGAAGGAGTCGACGTTGCA 29483 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| || || || || || ||||| || || || | Sbjct 29053 ATGCAGATCTTCGTCAAGACTCTCACAGGCAAGACCATTACCCTCGAGGTCGAGTCGTCC 29112 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || || ||| ||||| || ||| | || || || || Sbjct 29113 GACACTATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAG 29172 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || || ||||||| || || | || |||||| Sbjct 29173 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGACGGTCGTACCCTCTCGGACTACAAC 29232 Query 23791 ATACAAAAAGAGTCCACA 23808 || ||||| ||||||||| Sbjct 29233 ATCCAAAAGGAGTCCACA 29250 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| || || || || || |||||||| || || || Sbjct 28825 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACCCTCGAAGTCGAATCGTCG 28884 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || ||| | ||||| || || Sbjct 28885 GACACCATCGACAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGTATCCCGCCCGACCA 28943 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || || || |||| || || | || ||||| Sbjct 28944 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCTGACTACAA 29003 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 29004 CATCCAGAAGGAGTCGAC 29021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009484654224