Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq11 149 2e-30
seq2 149 2e-30
seq1 125 2e-23
>seq11
Length=562504
Score = 149 bits (164), Expect = 2e-30
Identities = 157/207 (76%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || ||||||||||| || || || ||||||||||| || || |||
Sbjct 29056 CAGATCTTCGTCAAGACTCTCACAGGCAAGACCATTACCCTCGAGGTCGAGTCGTCCGAC 29115
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || |||||||||||||| || || || ||||| ||||||||
Sbjct 29116 ACTATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAGCAG 29175
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| ||||| || ||||| ||||| || | || || | || || ||| ||
Sbjct 29176 CGTCTCATCTTTGCCGGCAAGCAGCTTGAAGACGGTCGTACCCTCTCGGACTACAACATC 29235
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
||||| || || ||||| || || |||
Sbjct 29236 CAAAAGGAGTCCACACTTCACCTCGTT 29262
Score = 145 bits (160), Expect = 2e-29
Identities = 151/198 (76%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992
|| || ||||| || || || || |||||||| ||||| || || |||||||||||
Sbjct 28328 GTCAAGACTCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCTTCGGACACCATCGAC 28387
Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052
|||||||| |||||||||||||| || || ||||| || |||||||| || || |||
Sbjct 28388 AACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCATC 28447
Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112
|| |||||||| |||||||| || || | || || | ||||| ||| |||| || ||
Sbjct 28448 TTTGCCGGAAAGCAGCTCGAGGACGGTCGTACCCTCTCGGATTACAACATCCAGAAGGAG 28507
Query 178113 TCAACACTGCATCTTGTT 178130
|| || || ||||| |||
Sbjct 28508 TCGACCCTTCATCTCGTT 28525
Score = 138 bits (152), Expect = 3e-27
Identities = 154/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || |||||||| || || || || |||||||| || ||| || |||
Sbjct 28828 CAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACCCTCGAAGTCGAATCGTCGGAC 28887
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || || ||||| |||||||| || || ||||| || ||||||||
Sbjct 28888 ACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAGCAG 28947
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| ||||| || |||||||| || || | || || | || || ||| ||
Sbjct 28948 CGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCTGACTACAACATC 29007
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || ||||||||
Sbjct 29008 CAGAAGGAGTCGACCCTTCATCTTGT 29033
Score = 136 bits (150), Expect = 1e-26
Identities = 143/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001
|| || || ||||||||||| || ||||| || || ||||||||||| ||||||||
Sbjct 28618 CTTACCGGCAAAACGATCACTCTTGAGGTTGAGTCTTCGGACACCATCGACAACGTCAAG 28677
Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061
||||| |||||||| || || ||||| || |||||||| || || ||||| |||||
Sbjct 28678 GCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCATCTTTGCCGGC 28737
Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121
|| |||||||| || || | || ||| | || || ||| |||| || || || || ||
Sbjct 28738 AAGCAGCTCGAGGACGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTT 28797
Query 178122 CATCTTGT 178129
||||||||
Sbjct 28798 CATCTTGT 28805
Score = 134 bits (148), Expect = 3e-26
Identities = 154/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || ||||| || || || ||||| || || || || || |||
Sbjct 29284 CAGATTTTCGTCAAGACCCTCACTGGCAAGACTATCACTCTTGAAGTTGAGTCGTCCGAC 29343
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || |||||||||||||| || || || || || ||||||||
Sbjct 29344 ACTATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAG 29403
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || |||||||| || || | |||||| |||| || ||| |
Sbjct 29404 CGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAACATT 29463
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|| || || || || |||| ||||||
Sbjct 29464 CAGAAGGAGTCGACGTTGCACCTTGTT 29490
>seq2
Length=3730214
Score = 149 bits (164), Expect = 2e-30
Identities = 151/197 (77%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992
|| || || ||||| || || || ||||||||||||||||| || |||||||||||
Sbjct 3658491 GTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATCGAC 3658432
Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052
|||||||| ||||| |||||||| || || ||||| || |||||||| || || |||
Sbjct 3658431 AACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCATC 3658372
Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112
|||||||| || |||||||| ||||| | || ||| | || || ||| |||| || ||
Sbjct 3658371 TTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAG 3658312
Query 178113 TCAACACTGCATCTTGT 178129
|| || || || || ||
Sbjct 3658311 TCGACCCTCCACCTCGT 3658295
>seq1
Length=4014173
Score = 125 bits (138), Expect = 2e-23
Identities = 126/164 (77%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992
|| || || ||||| || || || |||||||||||||| || || ||||| |||||
Sbjct 637070 GTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGATCGAC 637129
Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052
|||||||| ||||| |||||||| || || ||||| || |||||||| || ||||||
Sbjct 637130 AACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTTATC 637189
Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096
|||||||| || |||||||| || || | || ||| | || ||
Sbjct 637190 TTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTA 637233
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730768161432
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |