Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq11 165 8e-36
seq2 131 2e-25
seq1 96.9 3e-15
seq4 84.2 2e-11
>seq11
Length=562504
Score = 165 bits (182), Expect = 8e-36
Identities = 176/230 (77%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693
|||| || || ||||| | || || |||| ||| ||||||||||||||| |||||||
Sbjct 29509 CGCCTCCACGAAGACGAAGAACAAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGG 29450
Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753
| || ||||| |||| |||||||||||||| ||||| || || ||||| ||||| | ||
Sbjct 29449 AAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGG 29390
Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812
||| || |||||||||| ||| | || || | ||| | | | ||||||| ||||||
Sbjct 29389 GAATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCA 29331
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || | || || || || || || || ||||| ||||||||||||||
Sbjct 29330 ACTTCAAGAGTGATAGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 29281
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || || || || ||| |||||| || ||||| ||||| |||
Sbjct 29279 CCACCACGCAGGCGGAGAACGAGGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCCGAG 29220
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| || |||||||||||||| || || || ||||| ||||| | |||
Sbjct 29219 AGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGA 29160
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| | || || | ||| | | | ||||||| |||||| ||
Sbjct 29159 ATACCCTCCTTGTCC-TGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCGAC 29101
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || || || ||||| ||||| ||||||||
Sbjct 29100 CTCGAGGGTAATGGTCTTGCCTGTGAGAGTCTTGACGAAGATCTGCAT 29053
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || ||||| || || ||||||||| ||||| ||||| |||
Sbjct 29051 CCACCACGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 28992
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| ||||||||||||||||| || || || ||||| ||||| | ||
Sbjct 28991 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 28932
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || |||| || | | | ||||| ||| || ||
Sbjct 28931 ATACCCTCCTTGTCCTGGATCTTGGCCTTC-ACATTGTCGATGGTGTCCGACGATTCGAC 28873
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| | || || || || || || || ||||| ||||| ||||||||
Sbjct 28872 TTCGAGGGTAATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 28825
Score = 116 bits (128), Expect = 3e-21
Identities = 157/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | || ||||| || || ||||||||| ||||| || || |||
Sbjct 28542 CCACCGCGGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAG 28483
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| ||||||||||| ||||| || || || ||||| ||||| | ||
Sbjct 28482 AGGGTACGACCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 28423
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| | || || | ||| | | | ||||| ||||| ||
Sbjct 28422 ATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 28364
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
||| | || || || || ||||| || ||||| ||
Sbjct 28363 CTCAAGGGTGATGGTCTTGCCCGTAAGAGTCTTGAC 28328
Score = 109 bits (120), Expect = 5e-19
Identities = 150/207 (72%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || ||||| || || ||||||||| ||||| ||||| ||
Sbjct 28823 CCACCACGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 28764
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| ||||||||||||||||| || || || ||||| ||||| | ||
Sbjct 28763 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 28704
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| || | || || | ||| | | | ||||| ||||| ||
Sbjct 28703 ATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCAAC 28645
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAG 41841
||| | || |||||||| || || ||
Sbjct 28644 CTCAAGAGTGATCGTTTTGCCGGTAAG 28618
>seq2
Length=3730214
Score = 131 bits (144), Expect = 2e-25
Identities = 139/181 (77%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||| ||||| ||||| || |||||||| | || ||||||||||||||||||||
Sbjct 3658312 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 3658371
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790
|| |||||||| ||||| | ||| | || |||||||||| || | || || | |||
Sbjct 3658372 GATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGT 3658430
Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849
| | | |||||| |||||||||||| | || || || || ||||| || ||||| |
Sbjct 3658431 TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 3658490
Query 41850 C 41850
|
Sbjct 3658491 C 3658491
>seq1
Length=4014173
Score = 96.9 bits (106), Expect = 3e-15
Identities = 122/165 (74%), Gaps = 2/165 (1%)
Strand=Plus/Minus
Query 41687 TAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746
||||| || |||||||| |||| |||||||||||||||||||| || || ||||| |||
Sbjct 637233 TAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGG 637174
Query 41747 TCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCT 41805
|| | ||| | || |||||||||| || | || || | ||| | | | |||||
Sbjct 637173 TCAGGGGGGATGCCCTCCTTGTCC-TGGATCTTCGCCTTGACGTTGTCGATCGTGTCCGA 637115
Query 41806 CGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|||||| ||||| | || || || || || || || ||||| ||
Sbjct 637114 CGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAAC 637070
>seq4
Length=3306260
Score = 84.2 bits (92), Expect = 2e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 85812 CGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTCATCGACGCCGAC 85871
|| || |||||||| ||||||||| || || || |||||||| ||| |||| ||||||
Sbjct 627994 CGCTCGGGCCTCGCGGCCAAGCACGGCATTGATGTCGGCGCCGGCGTCGTCGATGCCGAC 628053
Query 85872 TACCGCGGAAACGTCATCATCGTACTCTTCAACCAC 85907
||| | ||| | |||| |||| ||||||||||||
Sbjct 628054 TACAGGGGAGAAGTCAAAGTCGTGCTCTTCAACCAC 628089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303838193600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |