Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6 100 6e-16 seq2 95.1 3e-14 >seq6 Length=2185627 Score = 100 bits (110), Expect = 6e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || ||||||||||| | || ||| | |||||||| || || || ||||||||| | Sbjct 94922 CTCATCGGCATGAACGCCGCGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGCCTG 94981 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | || || || || |||| || | ||||||||| ||||| || | ||||||||| Sbjct 94982 CTCGTCGCGCTCGGCAACGACAAGATTTACAACTCTGCAAACCCATTCGACTTTATGGAG 95041 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGA 230600 | || ||||| || || ||| | ||||||||||| Sbjct 95042 ATGATCTCGCTCCAGGGCAAGGCAAACTTCTTCGA 95076 >seq2 Length=3675159 Score = 95.1 bits (104), Expect = 3e-14 Identities = 276/413 (67%), Gaps = 18/413 (4%) Strand=Plus/Plus Query 281769 TCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTA 281828 || || |||||||| | | || || |||||||| | ||| | | ||| ||||| Sbjct 3085202 TCCTTGCCACCCTGGATACGCGTACCGAACTGACCGTTGGGCGAGAGGAGGTTGATGTTG 3085261 Query 281829 TTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGA--AGCGATACCTCAC 281886 ||||| || ||||| | ||||| || ||| || ||| ||| || || | |||| Sbjct 3085262 TTGCTGCCCACGTAGTTTTGAGCGAGACCGACAATGGTCA--TGACGAGGGACGCTTCAC 3085319 Query 281887 CGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCA-CGTCT 281945 ||||||| ||||| ||| || | |||||||||| || ||| || ||||| | | || Sbjct 3085320 CGTGGTGGTAGGCAGTGTTCTCAGAGACATAACCACCGAGCTGGGCGACCTTGATCTCCT 3085379 Query 281946 GATGTCAAGTTGCGTTTGAA-AGCGCAATATAATACTTTTCGTTGAGAAGGCTTGAAACC 282004 | | | | |||||| ||||| ||||| | | || || || ||| ||||||| || Sbjct 3085380 GCT-TGAGGTTGCGCTTGAAGCACGCAA-ACATCACCTTGCGCTGACCGGGCTTGAGGCC 3085437 Query 282005 ATCAACGACAGACGGAATG---CTG-CGTTCCAGGTCATACCGCGAGAACAAAATAAGTT 282060 || |||| || |||||| | | ||| || ||| ||||||| ||||| | Sbjct 3085438 GTCCGCGACCGAGGGAATGGAACGGATGTTGTCGGCCAT----GGAGAACAGGATAAGCT 3085493 Query 282061 CCTTGTCAATGAAGTCGGGAACGGGAACCTCGGGCTTCTTGTGGTCAAGTTGGTTTCCCG 282120 |||||| | ||||| | | ||| | || | | |||||| || | | || | Sbjct 3085494 CCTTGTTGACAAAGTCCTGGATGGGGATCTTCTCAATATCGTGGTCGAGGAAGGTACCGG 3085553 Query 282121 GCTCGTA-TGCCGTCATCCACTCCTTGCGATCCTCGGCCCGAGTCTTGTTGAA 282172 ||| | | || || | |||||||||||| || |||||| |||||||||| Sbjct 3085554 GCTTGAACTGGCG-AAGCCACTCCTTGCGGTCGTCGGCCTTCTTCTTGTTGAA 3085605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823606952270