Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1 136 5e-27 >seq1 Length=4238441 Score = 136 bits (150), Expect = 5e-27 Identities = 219/310 (71%), Gaps = 10/310 (3%) Strand=Plus/Plus Query 145962 GGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTA 146021 |||||| |||||||| | |||| ||||| | ||||||||| |||| ||| || Sbjct 1869387 GGGGTTGTGCTTGATCTTGTCGATCACTTCCCTCATCTGGTCCACCCCCTTGCCCGTATA 1869446 Query 146022 ATCTGTCTTGG--AGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACG 146079 ||| ||| | | ||| | ||||| |||| ||||| |||| |||||||||||| || ||| Sbjct 1869447 ATC-GTCATCGCAAGTGC-CGTACTCGGCGCCGAAATGCCGCCACTGGAACCCATACACG 1869504 Query 146080 GGCCCCAGGTCCCCGGGCTCCCT---GTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGG 146136 || |||| ||| || |||||| ||| |||||||| ||| | |||| | || ||| Sbjct 1869505 GGTCCCAAGTCACC---CTCCCTCCGGTGGCCCAGCCCAACCCTGTCGAGATACTCGCGG 1869561 Query 146137 GACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGAC 146196 |||||| ||||||| || | | | || || | ||| | | ||| ||| | Sbjct 1869562 CTTCCGTTGCCGTCCCAAATATGAATGTCCTTCTTCGCGAGGACGGCGCCGTCGGTGCAG 1869621 Query 146197 CCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTC 146256 ||| || ||||||||| ||||| |||| ||| || | |||||| | ||| ||||| Sbjct 1869622 CCCGAGACGAACCAGAGGAGCTCCTCGATGACGCCGCGGGTGAAGACGCGCTTCGTGGTG 1869681 Query 146257 AGCAGGGGGA 146266 || || |||| Sbjct 1869682 AGGAGCGGGA 1869691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590076586097160