Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq6 114 1e-20 seq2 91.5 1e-13 >seq6 Length=2185627 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| || | || | |||||||||||| |||||||| ||||||| | Sbjct 20461 CCACCACGCAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAC 20402 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| ||||| ||||| ||| | ||||| | ||||||||| || Sbjct 20401 AGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCGGGTGGG 20342 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| ||||| | | ||| || || | | ||| Sbjct 20341 ATACCCTCCTTGTCCTGAATCTTGCTCTTCACATTGTCGATGGTGTCGCTAGACTCGACC 20282 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | ||||| ||||| ||||| | || || ||||| || |||||| Sbjct 20281 TCGAGAGTAATCGTCTTTCCGGTGAGGGTCTTCACAAAGATCTGCATT 20234 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 23809 ACGTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCCGTGTCTCTGGCGG 23868 |||||||| ||||| |||||||| || || |||||| ||| || ||||| ||| || Sbjct 1016836 ACGTTGCCGAGGTCACCGACGTGGCGGTCGGCGGCGGTGGGGGCACCGTGGTTCTTGCCA 1016895 Query 23869 GTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGC 23928 ||||| ||||| |||| || || ||||||||||| | |||| || || ||||| Sbjct 1016896 AATGGGTTGAAGTGGCCGCCGGCCGAGGTGCAGCCGTTCGAGTTGTCTCCAAACTCGTGA 1016955 Query 23929 ACGT 23932 |||| Sbjct 1016956 ACGT 1016959 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | || || | || | |||||||||||| || ||||| ||||||| Sbjct 20235 TTCCACCGCGGAGGCGCAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCG 20176 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| | ||||||| ||||| ||||| || | || || | ||||||||| | Sbjct 20175 AGAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGTG 20116 Query 21067 GCACGCCTTCCTTGTCGGCGATCTT 21091 | | ||| |||||||| |||||| Sbjct 20115 GGATGCCCTCCTTGTCCTGGATCTT 20091 >seq2 Length=3675159 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| ||||||| ||||| || ||||||| ||||| ||||| Sbjct 2842997 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 2843056 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | ||||| | ||||||||| ||| | ||| |||||||| |||||| || Sbjct 2843057 GCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTG 2843116 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 || | | ||| || || || ||| || | ||| ||||||||||| || Sbjct 2843117 ACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 2843169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259050757764