Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq6 297 2e-75 seq2 140 3e-28 seq3 123 3e-23 seq8 102 8e-17 >seq6 Length=2185627 Score = 297 bits (328), Expect = 2e-75 Identities = 461/657 (70%), Gaps = 14/657 (2%) Strand=Plus/Plus Query 116780 GACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAG 116839 |||||||||||||||||||| || |||||||||||| ||||||||| | ||||| Sbjct 94400 GACGGCATCGTCAACGAGAACCTTGTCGAGCGTTTCTGCGGTGAGGTGCAGATTCCCGAG 94459 Query 116840 GCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCG 116899 || | ||||||||||| |||||| ||||||||| | |||||||| | ||| ||| Sbjct 94460 GCCAAGACATTCTACGGCTTCCAGATCATGATGGAGAACATTCACTCGGAGACGTACTCG 94519 Query 116900 ACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTT------TGTTGAAC 116953 |||||||||||||||| | ||| || | || ||| |||| ||| Sbjct 94520 CTCCTCATCGACACGTACATTCGC------GACAATGCGCGCCGCCACTACCTGTTCAAC 94573 Query 116954 GCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCC 117013 || || |||| || || ||| |||| |||||||||| |||||||| |||||| | Sbjct 94574 GCGATTGAGAACATTCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCAACTGGATTTCT 94633 Query 117014 GGCAGAGAGGCCGCC-TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTT 117072 | || ||| || | || | |||||| || | ||||| || |||||||||||| |||| Sbjct 94634 GACA-AGAACTCGTCGTTTGCCGAGCGTCTTATCGCCTTTGCCGCCGTCGAGGGCATCTT 94692 Query 117073 CTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCT 117132 ||| |||||| || ||| |||| || ||||||||||| ||||| ||||||||||| || Sbjct 94693 CTTCTCGGGCTCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCT 94752 Query 117133 GACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTT 117192 || ||| ||||||||||||||| | ||||||||||| || |||||||||||| | Sbjct 94753 CACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCT 94812 Query 117193 GCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGA 117252 ||| |||| || | | || || | | | | ||| |||| || ||| Sbjct 94813 GCTCTTCACCCACCTCCGCCGCCGCCCTCACCCAGACACCATCAACATGATCATCCGCGA 94872 Query 117253 CGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACT 117312 || || || |||||||| |||||||| || || || || || || | || | Sbjct 94873 GGCCGTTGCGATCGAGCAAGAGTTCCTCACAGACGCCCTCCCCGTCTCGCTCATCGGCAT 94932 Query 117313 CAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCT 117372 || || |||| || ||||| ||||| ||||||||| | ||||| ||| ||| Sbjct 94933 GAACGCCGCGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGCCTGCTCGTCGCGCT 94992 Query 117373 GGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTC 117429 | | || |||| |||||| | | ||||| | ||||||||| | | ||||| Sbjct 94993 CGGCAACGACAAGATTTACAACTCTGCAAACCCATTCGACTTTATGGAGATGATCTC 95049 Score = 134 bits (148), Expect = 1e-26 Identities = 149/196 (76%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || || || || ||||||||| |||| ||||| | | |||| | | | |||| |||| Sbjct 20028 CTGACCGGAAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCATCGACAACG-TCAA 20086 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || || | ||||| ||||||||||| | |||||||| || ||||||| ||| || Sbjct 20087 GTCCAAGATCCAGGACAAGGAGGGCATCCCACCCGACCAGCAGCGCCTCATCTTCGCCGG 20146 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||| ||||| || |||| ||||||||| ||||||||||||||||||||| |||| || Sbjct 20147 CAAGCAGCTCGAGGACGGACGCACCCTCTCGGACTACAACATCCAGAAGGAGTCCACTCT 20206 Query 40890 GCATCTAGTGTTGCGC 40905 || || || ||||| Sbjct 20207 TCACCTCGTCCTGCGC 20222 Score = 116 bits (128), Expect = 4e-21 Identities = 122/158 (77%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||| ||||| ||||||||| |||| ||||| | | |||| | | | |||| |||| Sbjct 19689 CTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCAGACACCATCGACAACG-TCAA 19747 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || || | ||||| |||||||||||| | |||||||| || ||||||| ||| || Sbjct 19748 GTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCATCTTCGCCGG 19807 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||| ||||| || |||| ||||||||| |||||||| Sbjct 19808 CAAGCAGCTCGAGGACGGACGCACCCTCTCCGACTACA 19845 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || ||||| |||| ||||| | || Sbjct 20463 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTCGAGTCGTCC 20522 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || |||| ||||| |||||||| || | |||||| Sbjct 20523 GACACGATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 20582 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| ||||| || || | || || || |||||||||| Sbjct 20583 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGTACGCTGTCCGACTACAAC 20642 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 20643 ATCCAGAAGGAGTCGACACTTCACCTCGT 20671 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || ||||| || || || || || |||| ||||| | | Sbjct 20234 AATGCAGATCTTTGTGAAGACCCTCACCGGAAAGACGATTACTCTCGAGGTCGAGTCTAG 20293 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | | | ||| || |||| ||||| ||||| ||||| | ||||| Sbjct 20294 CGACACCATCGACAATGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCACCCGACCA 20353 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| ||||| || |||| || || || |||||||| Sbjct 20354 GCAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACTCTGTCGGACTACAA 20413 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| |||| || || || || Sbjct 20414 CATTCAGAAGGAGTCCACTCTTCACCTCGT 20443 >seq2 Length=3675159 Score = 140 bits (154), Expect = 3e-28 Identities = 146/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||||||||| ||||||||| | || ||||| || | |||| | | | |||| |||| Sbjct 2843172 CTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAACG-TCAA 2843114 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || || | ||||| |||||||||||| | |||||||| || || |||| ||| || Sbjct 2843113 GTCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTTATCTTCGCCGG 2843054 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||| ||||| || |||| ||||||||| ||||||||||||||||||||| | || || Sbjct 2843053 CAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCT 2842994 Query 40890 GCATCTAGT 40898 || || || Sbjct 2842993 CCACCTCGT 2842985 Score = 107 bits (118), Expect = 2e-18 Identities = 120/158 (76%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || |||||||| ||||||||| |||| || || || | |||| | | | |||| |||| Sbjct 1356283 CTTACGGGCAAGACCATCACCCTCGAGGTGGAGTCCTCGGACACCATCGACAACG-TCAA 1356225 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || || | ||||| |||||||||||| | |||||||| || ||||||| ||| || Sbjct 1356224 GTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCCGG 1356165 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||| ||||| || |||| |||||||| ||||||| Sbjct 1356164 CAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACA 1356127 >seq3 Length=3502833 Score = 123 bits (136), Expect = 3e-23 Identities = 157/214 (73%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 |||||||| |||||||| | ||| || | |||| |||| ||| || || || Sbjct 1064840 AAGGCCGACTGGGCGCTCAAATACATCACCCCC-GAGATGCCG--TTCCGCACACGGTTG 1064896 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 | || ||||| |||||||| |||||||||| ||| ||||| ||||| || ||| Sbjct 1064897 ATAGCGTTCGCTTGTGTCGAGGGGATCTTCTTTTCTGGCTCGTTCGCTGCCATCTTCTGG 1064956 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 | ||||| ||||| ||||||| ||||| || ||| ||||||||||||||| | ||| Sbjct 1064957 TTGAAGAAGCGCGGACTCATGCGTGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGAC 1065016 Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGT 117197 ||||| ||| ||||||||||||| | |||| Sbjct 1065017 GAGGGCACACATACCGACTTTGCCTGTCTCCTGT 1065050 >seq8 Length=1129179 Score = 102 bits (112), Expect = 8e-17 Identities = 119/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || |||||||| ||||||||| |||| || || || | |||| | | | |||| |||| Sbjct 496371 CTTACGGGCAAGACCATCACCCTCGAGGTGGAGTCCTCGGACACCATCGACAACG-TCAA 496429 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || || | ||||| ||||||||||| | |||||||| || ||||||| ||| || Sbjct 496430 GTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGCCTCATCTTCGCCGG 496489 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||| ||||| || |||| |||||||| ||||||| Sbjct 496490 CAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACA 496527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219013233040