Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq6 125 6e-24 seq2 100 2e-16 seq8 93.3 4e-14 >seq6 Length=2185627 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||| | ||| ||||| || || |||||||| ||| || || || |||||||||||| Sbjct 20666 GTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTACGACCATCCTCGAGCTG 20607 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| |||| || |||||||| || ||||| |||||||||||||| ||| || Sbjct 20606 CTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTT 20547 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||||| | ||||||||||| || | ||| |||||||| Sbjct 20546 CGACTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATCGTCTTGCCGGT 20487 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| Sbjct 20486 GAGGGTCTTGACGAAGATCTGCAT 20463 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| || || ||| || ||||||||||| || || Sbjct 20431 GTGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCGTCCTCGAGCTGCTTGCCG 20372 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| ||||||||||| ||||| || || ||||||||||| ||| || || Sbjct 20371 GCAAAGATAAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGAATCTTGCTCTTC 20312 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | ||||||||||| || | ||| || ||||| || || Sbjct 20311 ACATTGTCGATGGTGTCGCTAGACTCGACCTCGAGAGTAATCGTCTTTCCGGTGAGGGTC 20252 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 20251 TTCACAAAGATCTGCAT 20235 Score = 105 bits (116), Expect = 6e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| || | ||||| ||||||||||| || || Sbjct 20203 GTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGTCCGTCCTCGAGCTGCTTGCCG 20144 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||| |||||||| ||||| || |||||||||||||| || || || Sbjct 20143 GCGAAGATGAGGCGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 20084 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 || | |||| |||||||| ||||||||||| ||| | || || |||||||| Sbjct 20083 ACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTTCCGGTCAG 20028 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||||||||| || || ||| ||||||| |||||||| ||||| || |||||||||||| Sbjct 19822 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 19763 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || || || || || | |||| |||||| | ||||||||||| ||| | Sbjct 19762 TCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCTGACGACTCGACCTCGAGGGTGATG 19703 Query 118704 GTTTTGCCGGTCAG 118717 || |||||||| || Sbjct 19702 GTCTTGCCGGTGAG 19689 Score = 84.2 bits (92), Expect = 2e-11 Identities = 230/349 (66%), Gaps = 5/349 (1%) Strand=Plus/Plus Query 44942 ATGCCCGGACTGACGTTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCACACCAAC 45001 |||||||| || || || |||||| | || ||| | ||||| ||||| |||||| || Sbjct 94742 ATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGAC 94801 Query 45002 TTTGCCTGCCTCTACTATAAT-ACGAGAGTCGATCAAAAGTTGGACGCGCCCACCGTCAA 45060 ||||||||||| || | || | || | | || | |||| |||| Sbjct 94802 TTTGCCTGCCTGCTCTTCACCCACCTCCGCCG--CCGCCCTC--ACCCAGACACCATCAA 94857 Query 45061 CGACATGTTCTCCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGA 45120 | || || ||| ||||| || |||||| || || | | || || || |||| Sbjct 94858 CATGATCATCCGCGAGGCCGTTGCGATCGAGCAAGAGTTCCTCACAGACGCCCTCCCCGT 94917 Query 45121 ATCGTTGGTGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCG 45180 ||| | | || |||||||| | ||| | |||||||||||||||||||||| || Sbjct 94918 CTCGCTCATCGGCATGAACGCCGCGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCG 94977 Query 45181 TCTTCTCGTCCAGTTAAAGTATCCCAAGATGTACTATACTGAGAACCCATTCGAGTTTAT 45240 || |||||| | | | |||||| ||| | ||| ||||||||||| ||||| Sbjct 94978 CCTGCTCGTCGCGCTCGGCAACGACAAGATTTACAACTCTGCAAACCCATTCGACTTTAT 95037 Query 45241 GAACAATATTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTC 45289 | | | || ||| | ||||||| | || || || ||| |||||| Sbjct 95038 GGAGATGATCTCGCTCCAGGGCAAGGCAAACTTCTTCGAGTCGCGCGTC 95086 >seq2 Length=3675159 Score = 100 bits (110), Expect = 2e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | ||||| ||||||||||| Sbjct 2842990 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTG 2843049 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| |||| ||||||||||| || || || |||||||||||||| || || Sbjct 2843050 CTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 2843109 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||||| | ||||||||| | ||| | || ||||| || Sbjct 2843110 CGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 2843169 Query 118715 CAG 118717 || Sbjct 2843170 GAG 2843172 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||||||||| || || ||| ||||||| |||||||| || || || |||||||||||| Sbjct 1356150 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 1356209 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || || || || || | |||| |||||||| | ||| ||||||| ||| | Sbjct 1356210 TCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCGAGGGTGATG 1356269 Query 118704 GTTTTGCCGGTCAG 118717 || ||||| || || Sbjct 1356270 GTCTTGCCCGTAAG 1356283 >seq8 Length=1129179 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||||||||| || || ||| ||||||| |||||||| || ||||| |||||||||||| Sbjct 496504 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTG 496445 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || || || || || | |||| |||||||| | ||| ||||||| ||| | Sbjct 496444 TCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCGAGGGTGATG 496385 Query 118704 GTTTTGCCGGTCAG 118717 || ||||| || || Sbjct 496384 GTCTTGCCCGTAAG 496371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830246668068