Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6 109 6e-19 seq8 84.2 3e-11 seq2 84.2 3e-11 >seq6 Length=2185627 Score = 109 bits (120), Expect = 6e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | |||||| || |||| || |||||||| || || || Sbjct 20426 CTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAA 20367 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 || || ||||||||||||| || | | |||||||||| ||| | || | || | Sbjct 20366 GATAAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCC-TGAATCTTGCTCTTCACAT 20308 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||||| || || || |||| || || || || || || || ||||| | Sbjct 20307 TGTCGATGGTGTCGCTAGACTCGACCTCGAGAGTAATCGTCTTTCCGGTGAGGGTCTTCA 20248 Query 43171 CAAAGATTTGCATT 43184 ||||||| |||||| Sbjct 20247 CAAAGATCTGCATT 20234 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | ||| || || | || || |||||||| ||||| || Sbjct 20654 CTCCTTCTGGATGTTGTAGTCGGACAGCGTACGACCATCCTCGAGCTGCTTGCCAGCAAA 20595 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||||||||| | || | || |||||||||| ||| | || | |||| Sbjct 20594 GATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC-TGAATCTTCGACTTGACAT 20536 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||||| ||| || || |||| ||||| || ||||| || || ||||| | Sbjct 20535 TGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTGA 20476 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 20475 CGAAGATCTGCAT 20463 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 20198 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAA 20139 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| || | || |||||||||| ||| || |||| ||| Sbjct 20138 GATGAGGCGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 20080 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 43162 | | | ||||| || || || |||| |||||||| || || || || Sbjct 20079 TGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTTCCGGTCAG 20028 Score = 86.0 bits (94), Expect = 7e-12 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 43003 TATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCT 43062 || |||| || | || || || |||| || |||||||| || ||||| ||||| |||| Sbjct 19848 TACTGTAGTCGGAGAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCT 19789 Query 43063 GCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTG 43121 ||||||||| || | || |||||||||| ||| || |||| ||| | | | ||| Sbjct 19788 GCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTG 19730 Query 43122 TCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 43162 || ||| || || |||| |||||||| ||||| || || Sbjct 19729 TCTGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAG 19689 >seq8 Length=1129179 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 43006 TGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCT 43065 |||| || | || || || |||| || |||||||| || ||||| ||||| ||||||| Sbjct 496527 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCT 496468 Query 43066 GGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG 43124 |||| | || | || |||||||||| ||| || |||| ||| | | | ||||| Sbjct 496467 GGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCC 496409 Query 43125 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 43162 || ||||| |||| |||||||| |||||||| || Sbjct 496408 GAGGACTCCACCTCGAGGGTGATGGTCTTGCCCGTAAG 496371 >seq2 Length=3675159 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 43006 TGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCT 43065 |||| || | || || || |||| || |||||||| || ||||| ||||| ||||||| Sbjct 1356127 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCT 1356186 Query 43066 GGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG 43124 |||| | || | || |||||||||| ||| || |||| ||| | | | ||||| Sbjct 1356187 GGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCC 1356245 Query 43125 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 43162 || ||||| |||| |||||||| |||||||| || Sbjct 1356246 GAGGACTCCACCTCGAGGGTGATGGTCTTGCCCGTAAG 1356283 Score = 82.4 bits (90), Expect = 9e-11 Identities = 123/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 2843002 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 2843061 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 2843062 GATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGT 2843120 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 43162 | | | ||||| || || || || | |||||||| |||||||| || Sbjct 2843121 TGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAG 2843172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817392716120