Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq5 269 6e-67 seq6 93.3 9e-14 >seq5 Length=2501492 Score = 269 bits (298), Expect = 6e-67 Identities = 625/927 (67%), Gaps = 30/927 (3%) Strand=Plus/Minus Query 248817 GTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAA 248876 |||| | | ||||| ||||| || || ||| ||||| ||||| || | ||||| Sbjct 909681 GTACAACTACTTTGGCTTCAAGACCCTCGAGCGCTCGTACCTCCTGCGCATCAACGGCAA 909622 Query 248877 GATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGA 248936 | ||| || || ||||||||| | ||||| || ||| | || || ||| || | Sbjct 909621 GGTCGCCGAGCGTCCCCAGCACATGATCATGCGTGTCGCTATTGGTATCCACGGCGACAA 909562 Query 248937 CATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCAC 248996 ||| |||| |||||||| ||||||| | ||| || || | | || || || | Sbjct 909561 CATTGAGAAGGTGCTCGACACGTACAACCTCATGTCGGAGCGTTACTTCACCCACGCGTC 909502 Query 248997 ACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGC 249056 || || |||||||||||||||||| | || ||| || ||||||||||| | || Sbjct 909501 GCCAACCCTCTTCAACGCCGGTACCCCCCACCCCCAGATGTCGTCGTGCTTTCTCGTCGC 909442 Query 249057 CATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTT 249115 |||| | |||||||| | |||||||| || ||||| || || || | || |||| | Sbjct 909441 CATGAAGGACGACTCGATTGACGGCATCTACGACACCCTCAAGACCTGC-GCTCAGATCT 909383 Query 249116 CTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACA 249175 | || || || || ||||||||| | || |||||| || || ||||| ||||||| Sbjct 909382 CCAAGACTGCTGGTGGTATCGGTCTCCACATCCACAACATTCGCGCCAAGGGCTCGTACA 909323 Query 249176 TCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCA 249235 | ||||| || || | | |||||||| ||| | || || || || ||| Sbjct 909322 TTGCCGGTACCAACGGCTACTCGAACGGTATCGTCCCCATGCTCCGCGCCTACGACGCCA 909263 Query 249236 CCGCCAGGTTCATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATT 249289 | ||| | | | || |||||| || ||||| || |||||||||| || Sbjct 909262 CTGCCCGTTACGTCGACCAGGGAGGCAACAAGCGCC---CTGGTGCGTTCGCCATCTACC 909206 Query 249290 TGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACG 249349 | || ||||||||||| | || || ||||| ||| | |||||| ||||||| | Sbjct 909205 TCGAGCCTTGGCACGCCGACGTGTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGG 909146 Query 249350 AGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCC 249409 || | | || |||||||||||||||| || ||| || ||||| | |||||| | Sbjct 909145 AGGAGGTTCGCGCTCGTGACCTCTTCTACGCTCTCTGGATCCCCGACCTTTTCATGAAGC 909086 Query 249410 GCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGA-CGCCCCGGACCTCATC 249468 | ||| ||||||||||||| ||||| || | | || |||| ||||||| ||| | Sbjct 909085 GTGTCGAGGCCGACGGCGACTGGACCCTCATGTGCCCTGCCGAGTGCCCCGG-TCTCGCC 909027 Query 249469 GA--TCTACACGGCGCCGACTTCGACCAAGC-CTATAAGAAATACGAATCCAACGGCATC 249525 || || || ||| | || || || |||| ||| ||| ||||| | ||||| Sbjct 909026 GACGTCCACTCGGAG--GAGTTTGA-GAAGCTCTACGAGAGCTACGAGGCTGCCGGCAAG 908970 Query 249526 G---GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGTCCCAGATA 249579 | ||||||| |||||||| | || || ||||| | | | ||| |||||| Sbjct 908969 GGTCGCAAGACCATCAAGGCCCAGAAGCTCTGGTTTGCCA---TCCTCGAGGCCCAGACC 908913 Query 249580 GAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACG 249638 ||||| || || || | | || | | ||| ||||| |||| |||| ||||| | Sbjct 908912 GAGACTGGTGGTCCCT-TCATGCTCTACAAGGACGCTGCCAACAGCAAGTCCAACCAGCA 908854 Query 249639 GCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAA 249698 ||| || || |||||| ||||| || ||||| | ||| | || | |||||| || Sbjct 908853 GCACCTCGGCACCATCAAGTCGTCCAACCTCTGCACTGAGATCATCGAGTACTCGGCCCC 908794 Query 249699 GGAGGAGATTGCCGTCTGCAACCTGGC 249725 || ||| | ||||||||||||||||| Sbjct 908793 CGACGAGGTCGCCGTCTGCAACCTGGC 908767 >seq6 Length=2185627 Score = 93.3 bits (102), Expect = 9e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 157276 CTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATCCACTCGAATGGGTTGGC 157335 ||| || ||||| | ||| |||||||| || ||||| ||||| | ||||||||||| || Sbjct 95077 CTCGAAGAAGTTTGCCTTGCCCTGGAGCGAGATCATCTCCATAAAGTCGAATGGGTTTGC 95018 Query 157336 GCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAGTCCGCCACAAACTTGAT 157395 ||||||| | |||||||| || ||| | ||| | ||| || ||||||| || Sbjct 95017 AGAGTTGTAAATCTTGTCGTTGCCGAGCGCGACGAGCAGGCGGTCGGCGACAAACTCAAT 94958 Query 157396 GTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGACGGGAAGCGC 157446 ||||| |||| | || | || |||||||||| |||||| || || Sbjct 94957 GTACTGGCACATGAGCGCGGCGTTCATGCCGATGAGCGAGACGGGGAGGGC 94907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766001028672