Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5 313 2e-80 seq6 205 8e-48 seq3 109 5e-19 >seq5 Length=2501492 Score = 313 bits (346), Expect = 2e-80 Identities = 653/964 (68%), Gaps = 14/964 (1%) Strand=Plus/Plus Query 23017 GACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAAT 23076 || ||| |||||||| || ||||| ||||| |||||||| || || |||||| | || Sbjct 908754 GAGGGCAATCGAGGCCAGGTTGCAGACGGCGACCTCGTCGGGGGCCGAGTACTCGATGAT 908813 Query 23077 TTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT-CTGGTTGCTTTTTCGAT 23135 || || || || ||| |||| || ||||| | | ||| ||||||| || | | Sbjct 908814 CTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGT-GCTGCTGGTTGGACTTGCTGT 908872 Query 23136 TGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCG 23195 || | ||||||||||||||| | || || |||||| ||| | ||||| ||| | Sbjct 908873 TGGCAGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCGGTCTGGGCCTCGAGGATGG 908932 Query 23196 CTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTT 23254 | ||| | |||| || | | ||| || ||| ||| | ||||||| | Sbjct 908933 CAAACCAGAGCTTCTGGGCCTTGATG-GTCTTGCGACCCTTGCCGGCAGCCTCGTAGCTC 908991 Query 23255 TGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATT--GCATCG 23312 | ||| | | ||||| || | || |||||| || ||||| | | ||| | Sbjct 908992 TCGTAGAGCTTCTCAAACTCCTCCGAGTGGACGTCGGCGAGACCGGGGCACTCGGCA--G 909049 Query 23313 GACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCC 23372 | |||||||| |||| ||| || || || |||| ||||| || || |||| Sbjct 909050 GGCACATGAGGGTCCAGTCGCCGTCGGCCTCGACACGCTTCATGAAAAGGTCGGGGATCC 909109 Query 23373 ATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAAT 23432 | ||||||||||| || || || ||||| |||||||| |||||| |||||| | | Sbjct 909110 AGAGAGCGTAGAAGAGGTCACGAGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGT 909169 Query 23433 CCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTC 23492 | | ||||| |||||||| || ||||| ||||||||||| | ||| ||||| || || | Sbjct 909170 CGAGGAAGTCGAACACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCGAACGCACCAGGGC 909229 Query 23493 TCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCA 23552 ||| ||||| ||||| |||||||||||||| ||| || ||| | | ||||| || | Sbjct 909230 GCTTGTTGCCTCCCTGGTCGACGTAACGGGCAGTGGCGTCGTAGGCGCGGAGCATGGGGA 909289 Query 23553 CGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGT 23612 ||| |||||| || |||| || || | ||| || || || |||| ||||| Sbjct 909290 CGATACCGTTCGAGTAGCCGTTGGTACCGGCAATGTACGAGCCCTTGGCGCGAATGTTGT 909349 Query 23613 GAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGT 23672 | | ||||| ||| || || || | | || || ||| ||||| || || |||| Sbjct 909350 GGATGTGGAGACCGATACCACCAGCAGTCTTGGAGATCTGAGCGCAGGTCTTGAGGGTGT 909409 Query 23673 CGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCG 23732 |||||||||| || || ||| || || | ||||| | || ||||| ||||| || | Sbjct 909410 CGTAGATGCCGTCAATCGAGTCGTCCTTCATGGCGACGAGAAAGCACGACGACATCTGGG 909469 Query 23733 CTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACA 23792 | ||| ||| |||| ||| || || || ||||| || ||||| | | ||||| Sbjct 909470 GGTGGGGGGTACCGGCGTTGAAGAGGGTTGGCGACGCGTGGGTGAAGTAACGCTCCGACA 909529 Query 23793 TTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGC 23852 | || ||||||||||||| | ||||||| || ||||| ||||| || ||||| | Sbjct 909530 TGAGGTTGTACGTGTCGAGCACCTTCTCAATGTTGTCGCCGTGGATACCAATAGCGACAC 909589 Query 23853 GCATCATCATGTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATG 23909 |||| ||||||| || || | || ||||| | |||||| || | || || | Sbjct 909590 GCATGATCATGTGCTGGGGACGCTCGGCGACCTT---GCCGTTGATGCGCAGGAGGTACG 909646 Query 23910 AACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGG 23969 | || | | || || || ||||| |||| || |||||| || |||| | |||| Sbjct 909647 AGCGCTCGAGGGTCTTGAAGCCAAAGTAGTTGTACGAAAAGTCGCGGTCGTAGATGATGG 909706 Query 23970 CCGA 23973 |||| Sbjct 909707 CCGA 909710 >seq6 Length=2185627 Score = 205 bits (226), Expect = 8e-48 Identities = 411/600 (69%), Gaps = 26/600 (4%) Strand=Plus/Plus Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAAC 57863 || || ||| | || || || | ||| ||||| |||||||| |||||| | ||||| Sbjct 94490 ATGGAGAACATTCACTCGGAGACGTACTCGCTCCTCATCGACACGTACATTCGCGACAAT 94549 Query 57864 GACGAGAAACGTAGAC-TGTTCAACGCGATCGA-AACAATGCCCGCGATCGCCAAGAAGG 57921 | || | | || ||||||||||||| || |||| | || || ||| ||||||| Sbjct 94550 G-CGCGCCGCCACTACCTGTTCAACGCGATTGAGAACATTCCCTGC-ATCAAGAAGAAGG 94607 Query 57922 CAGAGTGGTCAATCAAATGGATA----AAAAGCGCCACGGCCACGTTCGCCGAGAGGCTA 57977 | || ||| | |||| ||||| | ||| | | |||| |||||| | || Sbjct 94608 CCGACTGGGCGCTCAACTGGATTTCTGACAAGAACT----CGTCGTTTGCCGAGCGTCTT 94663 Query 57978 ATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGG 58037 ||||| || ||||||||||| || || ||||| |||||| ||||| | || || ||| Sbjct 94664 ATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCCTCCATCTTCTGG 94723 Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGAC 58097 | ||||| ||||| || |||||||| || || || ||||||| | || ||||||||| Sbjct 94724 CTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCGCGCGAC 94783 Query 58098 GAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACG 58157 ||||||||||| || || ||||| ||||| | | | | ||| | | || Sbjct 94784 GAGGGTCTCCACACCGACTTTGCCTGCCTGCTCTTCACCCACCTCCGCCGCCGCCCTCAC 94843 Query 58158 CGGGATCGCATCTTGGACATTATCA---CCGAGGCGGTCGCGATCGAAAATGAGTTTGTC 58214 | || || | | |||| |||| |||||| || |||||||| | ||||| || Sbjct 94844 CCAGA---CACCATCAACATGATCATCCGCGAGGCCGTTGCGATCGAGCAAGAGTTCCTC 94900 Query 58215 ACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATT 58274 || || ||||| || || | | |||| |||||| | | |||| |||||||| Sbjct 94901 ACAGACGCCCTCCCCGTCTCGCTCATCGGCATGAACGCCGCGCTCATGTGCCAGTACATT 94960 Query 58275 GAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCA----TTACAACAC 58330 |||||||| |||||| | | |||||| | | || | || || ||||||| | Sbjct 94961 GAGTTTGTCGCCGACCGCC---TGCTCGTCGCGCTCGG-CAACGACAAGATTTACAACTC 95016 Query 58331 GAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGA 58390 ||| || || || |||||| | ||||||||||| |||||||| ||||||| ||||| Sbjct 95017 TGCAAACCCATTCGACTTTATGGAGATGATCTCGCTCCAGGGCAAGGCAAACTTCTTCGA 95076 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| |||||||| |||| || || ||||| Sbjct 20463 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTCGAGTCGTCC 20522 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| ||| | || || |||||| Sbjct 20523 GACACGATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 20582 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || |||||||| ||| | || || | || || ||| || ||| Sbjct 20583 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGTACGCTGTCCGACTACAAC 20642 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| ||||| || || || Sbjct 20643 ATCCAGAAGGAGTCGACACTTCACCTCGTCCT 20674 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || || || ||||| || |||| || || | | Sbjct 20235 ATGCAGATCTTTGTGAAGACCCTCACCGGAAAGACGATTACTCTCGAGGTCGAGTCTAGC 20294 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||||||| || | || ||||||||| Sbjct 20295 GACACCATCGACAATGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCACCCGACCAG 20354 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||| ||| | || ||| ||| || || || ||| Sbjct 20355 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACTCTGTCGGACTACAAC 20414 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || |||||||| || || || | ||| | || |||| Sbjct 20415 ATTCAGAAGGAGTCCACTCTTCACCTCGTCCTCCGTCTGCGTGGTGGTA 20463 >seq3 Length=3502833 Score = 109 bits (120), Expect = 5e-19 Identities = 194/278 (70%), Gaps = 10/278 (4%) Strand=Plus/Plus Query 57978 ATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGG 58037 || |||||||| ||||| || || |||||||| ||| || || || || || ||| Sbjct 1064897 ATAGCGTTCGCTTGTGTCGAGGGGATCTTCTTTTCTGGCTCGTTCGCTGCCATCTTCTGG 1064956 Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGAC 58097 ||||||| ||||| || |||| ||||| || || ||||||| | || ||||||||| Sbjct 1064957 TTGAAGAAGCGCGGACTCATGCGTGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGAC 1065016 Query 58098 GAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC----ATTGTCAATAAACC 58153 ||||| ||||| || ||||| || || ||||| ||| | |||| ||| Sbjct 1065017 GAGGGCACACATACCGACTTTGCCTGTCTCCTGTACGGCCACCTCAAGCACCAATGCACC 1065076 Query 58154 GACG-CGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTG 58212 || | || | || || | | ||||||| |||||| || | ||| || || ||||| Sbjct 1065077 GAGGACGAGGTC-CA-CACG---ATTATCAGCGAGGCAGTTGAGATTGAGAAGGAGTTCC 1065131 Query 58213 TCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAAC 58250 |||| || || || ||| ||| || ||||||| ||| Sbjct 1065132 TCACAGAGGCGCTGCCGTGTGCCCTGATCGGTATCAAC 1065169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766238409680