Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq6 105 1e-17 >seq6 Length=2185627 Score = 105 bits (116), Expect = 1e-17 Identities = 179/255 (70%), Gaps = 7/255 (3%) Strand=Plus/Plus Query 101823 TGTTTAACGC--TGCACAACACTTCCCCGCCATCAAGAAGAAGGAGCAGTGGGCTATTAA 101880 |||| ||||| | | |||| ||||| || ||||||||||||| | ||||| | || Sbjct 94566 TGTTCAACGCGATTGAGAACA-TTCCCTGC-ATCAAGAAGAAGGCCGACTGGGCGCTCAA 94623 Query 101881 TTGGATGCAAAGCAATAAC---GATTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGA 101937 ||||| ||| ||| || || || | || | |||||||| || || || Sbjct 94624 CTGGATTTCTGACAAGAACTCGTCGTTTGCCGAGCGTCTTATCGCCTTTGCCGCCGTCGA 94683 Query 101938 AGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTT 101997 || |||||||| || | || || ||||| |||||| ||||||| | ||| | | Sbjct 94684 GGGCATCTTCTTCTCGGGCTCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCAT 94743 Query 101998 GCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTT 102057 ||| |||||||||| |||||| ||| |||| || | ||||| ||||| || |||||| Sbjct 94744 GCCCGGTCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTT 94803 Query 102058 TGCATGCATGCTGTT 102072 ||| ||| |||| || Sbjct 94804 TGCCTGCCTGCTCTT 94818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583632307695