Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6 125 9e-24 >seq6 Length=2185627 Score = 125 bits (138), Expect = 9e-24 Identities = 250/368 (68%), Gaps = 3/368 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| ||| ||||||||||| | || | ||||| || || ||||| Sbjct 94809 CAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGA 94750 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| || || ||||| || ||||| || ||||| || || || || || |||||| Sbjct 94749 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAG 94690 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCGC-TGTCATGT 33758 || || || || || |||||||| ||||| | ||| || | || | | ||||| Sbjct 94689 ATGCCCTCGACGGCGGCAAAGGCGATAAGACGCTCGGCAAACGACGAGTTCTTGTCAGAA 94630 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| || | ||||| ||||||||||| || | || || || | || || || || Sbjct 94629 ATCCAGTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGTTCTCAATCGCGTTG 94570 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 || || |||| | | || || || || ||||| | || ||| | Sbjct 94569 AACAGGTAGTGGCGGCGCGCATTGTCGCGAATGTACGTGTCGATGAGGAGCGAGTACGTC 94510 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 ||||| |||||||| || || ||||| || |||||||| | ||||||| |||| Sbjct 94509 TCCGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAATGTCTTGGCCTCGGGAATC 94450 Query 33939 TGCACTTC 33946 ||||| || Sbjct 94449 TGCACCTC 94442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817371691120