Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6 125 9e-24 >seq6 Length=2185627 Score = 125 bits (138), Expect = 9e-24 Identities = 179/250 (72%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || ||| ||| ||||||||||| | || | |||||||| || ||||| Sbjct 94809 CAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGA 94750 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 |||||||| || || ||||| || ||||| || ||||| ||||| || || || ||||| Sbjct 94749 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAG 94690 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCAC-TGTCATGT 36334 || || || || || |||||||| ||||| | ||| || | || | | ||||| Sbjct 94689 ATGCCCTCGACGGCGGCAAAGGCGATAAGACGCTCGGCAAACGACGAGTTCTTGTCAGAA 94630 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 ||||| || | ||||| ||||||||||| || | || || || |||| || || || Sbjct 94629 ATCCAGTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGTTCTCAATCGCGTTG 94570 Query 36395 AAGAGATAGT 36404 || || |||| Sbjct 94569 AACAGGTAGT 94560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172561412360