Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1 82.4 7e-11 >seq1 Length=4238441 Score = 82.4 bits (90), Expect = 7e-11 Identities = 209/310 (67%), Gaps = 10/310 (3%) Strand=Plus/Plus Query 21168 GGGTTCCACGCGCACATAACGATGCGCCGATCG-TGGGGCCGCCTG-TTAATTAGATCCA 21225 ||||||||||||| || || || ||||| ||| ||||| | || || || || | Sbjct 1869352 GGGTTCCACGCGCTCAACACAATACGCCGGTCGGTGGGGTTG--TGCTTGATCTTGTCGA 1869409 Query 21226 CCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACT 21285 ||| | | || |||||||||||||| ||| || | | | ||| | ||||| Sbjct 1869410 TCACTTCCCTCATCTGGTCCACCCCCTTGCCCGTATAATCGTCATCGCAAGTGCCGTACT 1869469 Query 21286 CCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGT 21345 | || || ||||| | |||||||||||| ||||| || |||| || ||||| | |||| Sbjct 1869470 CGGCGCCGAAATGCCGCCACTGGAACCCATACACGGGTCCCAAGTCACCCTCCCTCCGGT 1869529 Query 21346 CCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACG 21404 || ||||| | | | | | | | ||||| |||| |||||||||| | | | Sbjct 1869530 GGCC-CAGCCCAACCCTGTCGAGATACTCGCGGCTTCCGTTGCCGTCCCAAATATGAATG 1869588 Query 21405 --CCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCT 21462 | | |||| || ||| | ||||||| ||||| || ||||| || | ||||| Sbjct 1869589 TCCTTCTTCGCG--AGGACGGCGCCGTCGGTGCAGCCCGAGACGAACCAGAGGAGCTCCT 1869646 Query 21463 CCACGACGCC 21472 | | |||||| Sbjct 1869647 CGATGACGCC 1869656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427775848807920