Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6 140 5e-28 seq5 98.7 1e-15 >seq6 Length=2185627 Score = 140 bits (154), Expect = 5e-28 Identities = 279/411 (68%), Gaps = 3/411 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||| ||||||||||| | || || |||||||| || ||||| Sbjct 94809 CAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGA 94750 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || || ||||| || ||||| || ||||| ||||| || || || |||||| Sbjct 94749 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAG 94690 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACTGGCGC-TGTCATGT 50136 || || || || ||||||||||| | ||| | ||| || | || | | ||||| Sbjct 94689 ATGCCCTCGACGGCGGCAAAGGCGATAAGACGCTCGGCAAACGACGAGTTCTTGTCAGAA 94630 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| || | ||||| ||||||||||| || | || || || | || || || || Sbjct 94629 ATCCAGTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGTTCTCAATCGCGTTG 94570 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 || || |||| | | || || || || ||||| | || ||| | Sbjct 94569 AACAGGTAGTGGCGGCGCGCATTGTCGCGAATGTACGTGTCGATGAGGAGCGAGTACGTC 94510 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 ||||| |||||||| || || ||||| || |||||||| | ||||||| |||| Sbjct 94509 TCCGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAATGTCTTGGCCTCGGGAATC 94450 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 ||||| || || || || || | | || || || || || |||||| Sbjct 94449 TGCACCTCACCGCAGAAACGCTCGACAAGGTTCTCGTTGACGATGCCGTCA 94399 >seq5 Length=2501492 Score = 98.7 bits (108), Expect = 1e-15 Identities = 436/686 (64%), Gaps = 6/686 (1%) Strand=Plus/Plus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 || || || ||| |||| ||||| | | ||| || || || ||| || || ||||| Sbjct 909034 CCGGGGCACTCGGCAGGGCACATGAGGGTCCAGTCGCCGTCGGCCTCGACACGCTTCATG 909093 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 || || || || ||||| ||||| || || || | | | | |||||| || || Sbjct 909094 AAAAGGTCGGGGATCCAGAGAGCGTAGAAGAGGTCACGAGCGCGAACCTCCTCCTTGCCG 909153 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 ||||| || |||||||| | | | || | ||||| || || | ||| ||| Sbjct 909154 TGGTTCTTGCGGAGGTCGAGGAAGTCGAACACGTCGGCGTGCCAAGGCTCGAGGTAGATG 909213 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | || || || ||||| |||||||| || | ||| | || ||| | || Sbjct 909214 GCGAACGCACCAGGGCGCTTGTTGCCTCCCTGGTCGACGTAACGGGCAGTGGCGTCGTAG 909273 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTA-CCATTGGTCCCGGAGATATAGCTTCC 80189 | | | ||| || | ||||| || || ||| || ||||| |||| || || || Sbjct 909274 GCGCGGAGCATGGGGACGATACCGTTCGA-GTAGCCGTTGGTACCGGCAATGTACGAGCC 909332 Query 80190 ACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 80249 |||| ||||| || || ||||| || || || || | || ||||| || Sbjct 909333 CTTGGCGCGAATGTTGTGGATGTGGAGACCGATACCACCAGCAGTCTTGGAGATCTGAGC 909392 Query 80250 GCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAA 80309 ||| || | || || |||||||| || || || || ||||| | ||||| Sbjct 909393 GCAGGTCTTGAGGGTGTCGTAGATGCCGTCAATCGAGTCGTCCTTCATGGCGACGAGAAA 909452 Query 80310 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 80369 || ||||| ||| | | || || || || || | ||| || || ||||| || Sbjct 909453 GCACGACGACATCTGGGGGTGGGGGGTACCGGCGTTGAAGAGGGTTGGCGACGCGTGGGT 909512 Query 80370 AAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGA-- 80427 || | || |||| || |||||||| || | || |||| || | | Sbjct 909513 GAAGTAACGCTCCGACATGAGGTTGTACGTGTCGA--GCACCTTCTCAATGTTGTCGCCG 909570 Query 80428 TGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTT 80487 || || || | ||||||||||| | ||||||||| || | || ||| |||| || Sbjct 909571 TGGATACCAATAGCGACACGCATGATCATGTGCTGGGGACGCTCGGCGACCTTGCCGTTG 909630 Query 80488 ATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 80547 || || | ||| || || | || || || ||||| |||||||| |||||||| Sbjct 909631 ATGCGCAGGAGGTACGAGCGCTCGAGGGTCTTGAAGCCAAAGTAGTTGTACGAAAAGTCG 909690 Query 80548 CGTTCGTAAATAATAACCGAGTTGAG 80573 || ||||| || || |||||| ||| Sbjct 909691 CGGTCGTAGATGATGGCCGAGTCGAG 909716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268539627560