Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6 122 1e-22 >seq6 Length=2185627 Score = 122 bits (134), Expect = 1e-22 Identities = 275/411 (67%), Gaps = 3/411 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||| ||| |||||||| || | || | |||||||| || ||||| Sbjct 94809 CAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGA 94750 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| || || ||||| || ||||| || || || ||||| || || || |||||| Sbjct 94749 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAG 94690 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCACT-GTCATGT 42241 || || || || || |||||||| ||||| | ||| || | || | || |||| Sbjct 94689 ATGCCCTCGACGGCGGCAAAGGCGATAAGACGCTCGGCAAACGACGAGTTCTTGTCAGAA 94630 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| || | ||||| ||||||||||| || | || || || | || || || || Sbjct 94629 ATCCAGTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGTTCTCAATCGCGTTG 94570 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 || || |||| | | || || || || ||||| | || ||| | Sbjct 94569 AACAGGTAGTGGCGGCGCGCATTGTCGCGAATGTACGTGTCGATGAGGAGCGAGTACGTC 94510 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || |||||||| || || ||||| || |||||||| ||||||||| || | Sbjct 94509 TCCGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAATGTCTTGGCCTCGGGAATC 94450 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 || || || || || || || | | || ||||| || || |||||| Sbjct 94449 TGCACCTCACCGCAGAAACGCTCGACAAGGTTCTCGTTGACGATGCCGTCA 94399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138956712040