Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 197 2e-45 seq5 145 1e-29 seq3 89.7 8e-13 >seq6 Length=2185627 Score = 197 bits (218), Expect = 2e-45 Identities = 469/700 (67%), Gaps = 29/700 (4%) Strand=Plus/Plus Query 125163 TCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCC 125221 || || || ||||||||||| || || || || || |||| ||| || ||||| Sbjct 94397 TCTGACGGCATCGTCAACGAGAACCTTGTCGAG-CGTTTCTGCGGTGAGGTGCAGATTCC 94455 Query 125222 AGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTA 125281 |||| | || ||||| ||||| |||||||| |||||| | |||||||| | ||| Sbjct 94456 CGAGGCCAAGACATTCTACGGCTTCCAGATCATGATGGAGAACATTCACTCGGAGACGTA 94515 Query 125282 CTCTACACTGATTGACATGTACATTCGCGA---TCCGCAACGTAAACACATGCTCTTTAA 125338 ||| || || |||| |||||||||||| | ||| || | || || || || Sbjct 94516 CTCGCTCCTCATCGACACGTACATTCGCGACAATGCGCGCCGCCACTACCTGTTC---AA 94572 Query 125339 CGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGA 125398 ||| || || | | || | || || ||||| | |||| | | ||||| Sbjct 94573 CGCGATTGAGAACATTCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCAACTGGATTTC 94632 Query 125399 TGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTT 125458 |||| | || || |||| ||||| | || | || || |||||||| ||||||||||| Sbjct 94633 TGACAAGAACTCGTCGTTTGCCGAGCGTCTTATCGCCTTTGCCGCCGTCGAGGGCATCTT 94692 Query 125459 CTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACT 125518 ||| ||||| ||||| ||||||| ||||||||||||||||| ||||||||||| || Sbjct 94693 CTTCTCGGGCTCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCT 94752 Query 125519 GACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCT 125578 || | |||||| | || || || |||||||| || ||| ||||||||| || Sbjct 94753 CACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCT 94812 Query 125579 ACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACAT 125638 || || || | | || || || | | | |||| | ||||||||| Sbjct 94813 GCTCTT---CACCCACCTCCG-CCGCCGCCCTCACCCAG--------ACACCATCAACAT 94860 Query 125639 TGTAA---CCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAG 125695 | | ||| ||||| ||| || |||||||| || || || |||| || ||| Sbjct 94861 GATCATCCGCGAGGCCGTTGCGATCGAGCAAGAGTTCCTCACAGACGCCCTCCCCGTCTC 94920 Query 125696 CATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCT 125755 | || ||||||||| | ||| |||||| ||||||| |||||||| || || || || Sbjct 94921 GCTCATCGGCATGAACGCCGCGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGCCT 94980 Query 125756 ACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCAT 125812 || || | | ||| || ||||||||||||| | || || || || || || Sbjct 94981 GCT---CGTCGCGCTCGGCAACGACAAGATTTACAACTCTGCAAACCCATTCGACTTTAT 95037 Query 125813 GACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAG 125852 | | || || || |||| ||| | ||||| |||||| Sbjct 95038 GGAGATGATCTCGCTCCAGGGCAAGGCAAACTTCTTCGAG 95077 >seq5 Length=2501492 Score = 145 bits (160), Expect = 1e-29 Identities = 329/488 (67%), Gaps = 10/488 (2%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| ||||| | || ||||||||||| ||| Sbjct 909245 CAGGGAGGCAACAAGCGCCCTGGTGCGTTCGCCATCTACCTCGAGCCTTGGCACGCCGAC 909186 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || ||||| |||| | ||||| ||| ||| || |||| || || | ||| Sbjct 909185 GTGTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCTCGTGAC 909126 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || || |||||| | || || | ||||||||||| ||| | | || ||| || Sbjct 909125 CTCTTCTACGCTCTCTGGATCCCCGACCTTTTCATGAAGCGTGTCGAGGCCGACGGCGAC 909066 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| ||| |||||||| | | || |||||||| |||| | || |||||| Sbjct 909065 TGGACCCTCATGTGCCCTGCCGAGTGCCCCGGTCTCGCCGACGTCCACTCGGAGGAGTTT 909006 Query 97116 GAGGCCAAG---TACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGC 97171 ||| ||| ||| | ||||||| | ||| | || |||| | || | || Sbjct 909005 GAG---AAGCTCTACGAGAGCTACGAGGCTGCCGGCAAGGGTCGCAAGACCA-TCAAGGC 908950 Query 97172 ACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230 | |||| || ||| |||||| | ||| ||| |||||||| ||| | ||| | Sbjct 908949 -CCAGAAGCTCTGGTTTGCCATCCTCGAGGCCCAGACCGAGACTGGTGGTCCCTTCATGC 908891 Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290 |||||||||| | | || |||| |||||| | ||| | |||||||||||| | Sbjct 908890 TCTACAAGGACGCTGCCAACAGCAAGTCCAACCAGCAGCACCTCGGCACCATCAAGTCGT 908831 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTC 97350 |||| || ||||| || || | |||||| | | || |||||| || || ||| | Sbjct 908830 CCAACCTCTGCACTGAGATCATCGAGTACTCGGCCCCCGACGAGGTCGCCGTCTGCAACC 908771 Query 97351 TGGCATCG 97358 |||| ||| Sbjct 908770 TGGCCTCG 908763 >seq3 Length=3502833 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 125445 GTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGA 125504 || ||||| ||||||||||| || || || |||||||| ||| | |||||||||||| Sbjct 1064912 GTCGAGGGGATCTTCTTTTCTGGCTCGTTCGCTGCCATCTTCTGGTTGAAGAAGCGCGGA 1064971 Query 125505 CTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGT 125564 ||||||| || || || | |||||| | || || || ||||||||| ||| Sbjct 1064972 CTCATGCGTGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGCACACATACC 1065031 Query 125565 GACTTTGCCATTCTACTGT 125583 ||||||||| ||| |||| Sbjct 1065032 GACTTTGCCTGTCTCCTGT 1065050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058931366040