Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 4e-14 >seq6 Length=2185627 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/127 (77%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 ||||||||| || || |||||||| || || |||||| ||| || ||||| || | || Sbjct 1016835 GACGTTGCCGAGGTCACCGACGTGGCGGTCGGCGGCGGTGGGGGCACCGTGGTTCT--TG 1016892 Query 21198 CGTA--GGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCG 21255 | | ||||| ||||| ||||||| || ||||||||||| | |||| || |||||| Sbjct 1016893 CCAAATGGGTTGAAGTGGCCGCCGGCCGAGGTGCAGCCGTTCGAGTTGTCTCCAAACTCG 1016952 Query 21256 TGAACGT 21262 ||||||| Sbjct 1016953 TGAACGT 1016959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414572653474426